miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26431 5' -60.6 NC_005345.2 + 31554 0.66 0.456936
Target:  5'- cCCCuuGGGCcgcGGGCAGaUGgcGGCGa- -3'
miRNA:   3'- -GGGggCCCG---CUCGUCcACauUCGCcc -5'
26431 5' -60.6 NC_005345.2 + 14933 0.66 0.456936
Target:  5'- gCCCCGGGCGAacuGCugccccauGGUGacGGCGu- -3'
miRNA:   3'- gGGGGCCCGCU---CGu-------CCACauUCGCcc -5'
26431 5' -60.6 NC_005345.2 + 23107 0.66 0.456936
Target:  5'- gCUCgCCGaGGCGAGCgAGGcgGcGAGuCGGGu -3'
miRNA:   3'- -GGG-GGC-CCGCUCG-UCCa-CaUUC-GCCC- -5'
26431 5' -60.6 NC_005345.2 + 36517 0.66 0.438087
Target:  5'- gCCCC-GGCGAaCuGGcGUGGGUGGGc -3'
miRNA:   3'- gGGGGcCCGCUcGuCCaCAUUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 610 0.66 0.435298
Target:  5'- gCCaCCGGGUGAccauggugcggaucGCGuccucggccugcGGcGUGAGCGGGa -3'
miRNA:   3'- gGG-GGCCCGCU--------------CGU------------CCaCAUUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 43972 0.66 0.428831
Target:  5'- aCCUCGGGCGAGCcuucGaGGGCGGc -3'
miRNA:   3'- gGGGGCCCGCUCGuccaCaUUCGCCc -5'
26431 5' -60.6 NC_005345.2 + 25734 0.66 0.419691
Target:  5'- -aCCCGGGCGucgcGguGGUGgcaGGCGa- -3'
miRNA:   3'- ggGGGCCCGCu---CguCCACau-UCGCcc -5'
26431 5' -60.6 NC_005345.2 + 19957 0.66 0.418783
Target:  5'- uUCCCaGGCGcAGCcGGUcGUAcucguucAGCGGGa -3'
miRNA:   3'- gGGGGcCCGC-UCGuCCA-CAU-------UCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 21759 0.66 0.414264
Target:  5'- gCCCCugugcugcucgcuggCGGGCGAGcCGGG-GUcGGGUGGa -3'
miRNA:   3'- -GGGG---------------GCCCGCUC-GUCCaCA-UUCGCCc -5'
26431 5' -60.6 NC_005345.2 + 4430 0.66 0.41067
Target:  5'- gCCaCgGGGCGAGaucgAGGUcGUGuggaggcuccGGCGGGg -3'
miRNA:   3'- gGG-GgCCCGCUCg---UCCA-CAU----------UCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 18789 0.67 0.400005
Target:  5'- gCCgCGGGCugccgucGGGCAGG-GUGAcggcggcGCGGGc -3'
miRNA:   3'- gGGgGCCCG-------CUCGUCCaCAUU-------CGCCC- -5'
26431 5' -60.6 NC_005345.2 + 9903 0.67 0.392995
Target:  5'- aCUCgGcGGCGAGCAGGaaUGAcCGGGg -3'
miRNA:   3'- gGGGgC-CCGCUCGUCCacAUUcGCCC- -5'
26431 5' -60.6 NC_005345.2 + 35003 0.67 0.392995
Target:  5'- gCgCCgGGGCGcugcGGCGGccacGUGggGGCGGGa -3'
miRNA:   3'- -GgGGgCCCGC----UCGUC----CACauUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 18026 0.67 0.392124
Target:  5'- aCgCCGGGCGAGCgcAGGaacgcggccacguUGc-GGCGGGu -3'
miRNA:   3'- gGgGGCCCGCUCG--UCC-------------ACauUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 30514 0.67 0.384344
Target:  5'- -aCCCGGGCGGGUAcc-GgcAGCGGa -3'
miRNA:   3'- ggGGGCCCGCUCGUccaCauUCGCCc -5'
26431 5' -60.6 NC_005345.2 + 39568 0.67 0.384344
Target:  5'- gUCCCGGccggucguGCGuucGCAGGUGc--GCGGGg -3'
miRNA:   3'- gGGGGCC--------CGCu--CGUCCACauuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 13593 0.67 0.375821
Target:  5'- gUCCCGGGCGAGCccGa--AGGCGGc -3'
miRNA:   3'- gGGGGCCCGCUCGucCacaUUCGCCc -5'
26431 5' -60.6 NC_005345.2 + 18149 0.67 0.375821
Target:  5'- aUCCCCGGcGuCGGGUAcagccucggcucGGUGUGGGCGu- -3'
miRNA:   3'- -GGGGGCC-C-GCUCGU------------CCACAUUCGCcc -5'
26431 5' -60.6 NC_005345.2 + 27464 0.67 0.375821
Target:  5'- cCUCCCGGGCccuG-AGGg--GGGCGGGg -3'
miRNA:   3'- -GGGGGCCCGcu-CgUCCacaUUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 47134 0.67 0.375821
Target:  5'- gCCCCGGagcagcggaGCGAGgGGGcgcUGUGAGCGc- -3'
miRNA:   3'- gGGGGCC---------CGCUCgUCC---ACAUUCGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.