miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26443 5' -55.1 NC_005357.1 + 41336 1.09 0.000703
Target:  5'- cCGCGCGACACGGCCAAGGCAAUCUACc -3'
miRNA:   3'- -GCGCGCUGUGCCGGUUCCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 13689 0.69 0.441669
Target:  5'- cCGCGCugGACGauGCCAAGGCGcUCa-- -3'
miRNA:   3'- -GCGCG--CUGUgcCGGUUCCGUuAGaug -5'
26443 5' -55.1 NC_005357.1 + 32647 0.69 0.472177
Target:  5'- uGCGCGACcUGGCCGcguGGaaCGAUCUGg -3'
miRNA:   3'- gCGCGCUGuGCCGGUu--CC--GUUAGAUg -5'
26443 5' -55.1 NC_005357.1 + 13762 0.66 0.659222
Target:  5'- cCGCGCuGGCGaGGCCGccGGCAccgAUCUGg -3'
miRNA:   3'- -GCGCG-CUGUgCCGGUu-CCGU---UAGAUg -5'
26443 5' -55.1 NC_005357.1 + 2565 0.72 0.300028
Target:  5'- uGUGCGACACGGCCcAGcGCG---UGCg -3'
miRNA:   3'- gCGCGCUGUGCCGGuUC-CGUuagAUG- -5'
26443 5' -55.1 NC_005357.1 + 16497 0.72 0.306984
Target:  5'- aGCGCGgcgacauGCugGGCCAccGCAAgCUGCa -3'
miRNA:   3'- gCGCGC-------UGugCCGGUucCGUUaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 14590 0.71 0.346157
Target:  5'- aGCaGCGGCGCGGCCGgcgccaccgcGGGCAgcgcgcgcgaggacGUgCUGCg -3'
miRNA:   3'- gCG-CGCUGUGCCGGU----------UCCGU--------------UA-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 7816 0.7 0.384186
Target:  5'- uCGC-UGAUAUGGUCGAGGCGcggCUGCa -3'
miRNA:   3'- -GCGcGCUGUGCCGGUUCCGUua-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 14084 0.7 0.402793
Target:  5'- gCGCGCugcccGACGaGGCCAAGGCcAUCg-- -3'
miRNA:   3'- -GCGCG-----CUGUgCCGGUUCCGuUAGaug -5'
26443 5' -55.1 NC_005357.1 + 28281 0.69 0.441669
Target:  5'- aCGCGCuGGaACGGCCGgaAGGCAAgccgCUGg -3'
miRNA:   3'- -GCGCG-CUgUGCCGGU--UCCGUUa---GAUg -5'
26443 5' -55.1 NC_005357.1 + 18876 0.69 0.43175
Target:  5'- uGCcgGCGAUGuCGGCCGAGGCcAUCgaccGCg -3'
miRNA:   3'- gCG--CGCUGU-GCCGGUUCCGuUAGa---UG- -5'
26443 5' -55.1 NC_005357.1 + 8450 0.7 0.402793
Target:  5'- gGCGCGAUGuCGGCguCGAGGUGGcCUGCg -3'
miRNA:   3'- gCGCGCUGU-GCCG--GUUCCGUUaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 10723 0.75 0.207174
Target:  5'- gCGCGCGGCGggcUGGUC-AGGCGGUgCUGCa -3'
miRNA:   3'- -GCGCGCUGU---GCCGGuUCCGUUA-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 20107 0.69 0.43175
Target:  5'- gGCGCGuucgGCACGGCCAGcaGCAucgugCUGCc -3'
miRNA:   3'- gCGCGC----UGUGCCGGUUc-CGUua---GAUG- -5'
26443 5' -55.1 NC_005357.1 + 31895 0.74 0.212888
Target:  5'- uGCGCGugGCGGCgGAaagcguggccGGCGGUCaGCa -3'
miRNA:   3'- gCGCGCugUGCCGgUU----------CCGUUAGaUG- -5'
26443 5' -55.1 NC_005357.1 + 12671 0.7 0.384186
Target:  5'- aCGCGCcuGGCAgCaGCCGAGGCcgaguUCUACg -3'
miRNA:   3'- -GCGCG--CUGU-GcCGGUUCCGuu---AGAUG- -5'
26443 5' -55.1 NC_005357.1 + 21288 0.69 0.43175
Target:  5'- gGCGCGGacacgGCGGCCAagcuGGGCAgcGUCg-- -3'
miRNA:   3'- gCGCGCUg----UGCCGGU----UCCGU--UAGaug -5'
26443 5' -55.1 NC_005357.1 + 29512 0.69 0.451716
Target:  5'- aGCGUuaugGGCGCGGCCGAGcGCA-UCg-- -3'
miRNA:   3'- gCGCG----CUGUGCCGGUUC-CGUuAGaug -5'
26443 5' -55.1 NC_005357.1 + 15304 0.72 0.285008
Target:  5'- gCGCGCGGCgucagcuuuGCaGGCUAAGGCAcugGUaCUGCa -3'
miRNA:   3'- -GCGCGCUG---------UG-CCGGUUCCGU---UA-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 38407 0.71 0.339386
Target:  5'- cCGCGCGGCAugacgcuggUGGCCGgcgcguuuuGGGCGgacaucuAUCUGCu -3'
miRNA:   3'- -GCGCGCUGU---------GCCGGU---------UCCGU-------UAGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.