Results 21 - 40 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26450 | 3' | -56.4 | NC_005357.1 | + | 8116 | 0.7 | 0.384622 |
Target: 5'- cCUGCACCgcgCGGCCgGCguugguugugGGCGUGCGGGu -3' miRNA: 3'- -GAUGUGGa--GCUGG-UG----------CCGCGCGUUCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8585 | 0.66 | 0.620107 |
Target: 5'- -gACACgaCGGUCACGGCGacCGUggGGa -3' miRNA: 3'- gaUGUGgaGCUGGUGCCGC--GCGuuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8619 | 0.71 | 0.325355 |
Target: 5'- uUGCGCuuCUCGGCCgcuGCGGUG-GCGAGGu -3' miRNA: 3'- gAUGUG--GAGCUGG---UGCCGCgCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8688 | 0.68 | 0.490996 |
Target: 5'- -cGCACCUCGGCguUGGUGUacugGCcGGGu -3' miRNA: 3'- gaUGUGGAGCUGguGCCGCG----CGuUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8727 | 0.71 | 0.325355 |
Target: 5'- -cGCACCUUGAgccgggacaCCAgGGCGCGCGc-- -3' miRNA: 3'- gaUGUGGAGCU---------GGUgCCGCGCGUucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8861 | 0.68 | 0.450612 |
Target: 5'- gUugGCCUCGgucGCCACGaaGCGgGCGcGGg -3' miRNA: 3'- gAugUGGAGC---UGGUGC--CGCgCGUuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8981 | 0.73 | 0.227878 |
Target: 5'- -aACGCCUCGAUUuccuCGcCGCGCGGGGg -3' miRNA: 3'- gaUGUGGAGCUGGu---GCcGCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 9326 | 0.68 | 0.480738 |
Target: 5'- -cGCACgUCGG-CGCGGCGgGCGGcGGc -3' miRNA: 3'- gaUGUGgAGCUgGUGCCGCgCGUU-CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 9721 | 0.71 | 0.302115 |
Target: 5'- aUACGCCUCGaaGCCGCGGgcgaacugcuCGUGguGGGc -3' miRNA: 3'- gAUGUGGAGC--UGGUGCC----------GCGCguUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 9882 | 0.69 | 0.421553 |
Target: 5'- gCUGCuuCUCGGCCA-GGCGCGUg--- -3' miRNA: 3'- -GAUGugGAGCUGGUgCCGCGCGuucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 9974 | 0.68 | 0.501356 |
Target: 5'- --cCACCUCGcAgUAgGGgGCGUAGGGg -3' miRNA: 3'- gauGUGGAGC-UgGUgCCgCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 10576 | 0.7 | 0.384622 |
Target: 5'- -aGCGCCUCGGgcguaguacCCA-GGCGCGCAGc- -3' miRNA: 3'- gaUGUGGAGCU---------GGUgCCGCGCGUUcc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 10686 | 0.69 | 0.431115 |
Target: 5'- uUGCGUCUUGACgGCaGCGCGCAcGGc -3' miRNA: 3'- gAUGUGGAGCUGgUGcCGCGCGUuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 10743 | 0.68 | 0.480738 |
Target: 5'- uUGCugCUCG-CCAagGGCGCGCucGa -3' miRNA: 3'- gAUGugGAGCuGGUg-CCGCGCGuuCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 11100 | 0.66 | 0.583826 |
Target: 5'- -aGCACCuugUCGGCUGCGGCcaauugguucaaacGUGCGAGc -3' miRNA: 3'- gaUGUGG---AGCUGGUGCCG--------------CGCGUUCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 12534 | 0.7 | 0.384622 |
Target: 5'- gUGCugCUCGACCuCGGCGuCGguGa- -3' miRNA: 3'- gAUGugGAGCUGGuGCCGC-GCguUcc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 12877 | 0.67 | 0.526594 |
Target: 5'- -gAUACCcCGAgCACGGCGUGgguguccucugcggcCAGGGg -3' miRNA: 3'- gaUGUGGaGCUgGUGCCGCGC---------------GUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 13153 | 0.75 | 0.174359 |
Target: 5'- aCUGCGCCUCGAUguCGGCcagugucggccGCGCuGGGc -3' miRNA: 3'- -GAUGUGGAGCUGguGCCG-----------CGCGuUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 13344 | 0.68 | 0.460541 |
Target: 5'- -cGgGCCU-GACCuCGGCGCcCGAGGa -3' miRNA: 3'- gaUgUGGAgCUGGuGCCGCGcGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 13610 | 0.71 | 0.333392 |
Target: 5'- -cGCaACC-CGACgACGGCGCGCu-GGc -3' miRNA: 3'- gaUG-UGGaGCUGgUGCCGCGCGuuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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