miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 33041 0.66 0.973518
Target:  5'- cGCGACauGCAGugGcuGCA-CAAUgcacGCGGCCg -3'
miRNA:   3'- -UGUUG--CGUCugU--UGUaGUUA----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 31284 0.66 0.973518
Target:  5'- cCGACGU-GGCAGCGaagCcugGCGACCg -3'
miRNA:   3'- uGUUGCGuCUGUUGUa--GuuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 7813 0.66 0.973518
Target:  5'- cACu-CGCuGAUAugGUCGAggcGCGGCUg -3'
miRNA:   3'- -UGuuGCGuCUGUugUAGUUa--CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 41437 0.66 0.973518
Target:  5'- -uGGCGCGGGCAGCGggcugaCGGUGaagGGCUg -3'
miRNA:   3'- ugUUGCGUCUGUUGUa-----GUUACg--CUGG- -5'
26454 3' -47.7 NC_005357.1 + 36447 0.66 0.973518
Target:  5'- aGCGACGCAGACggUGUgGAauccaccuUGACCc -3'
miRNA:   3'- -UGUUGCGUCUGuuGUAgUUac------GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 15058 0.66 0.973207
Target:  5'- -uGAUGCGGGCAAUGUucgacugaaauugCAGgcugcuuugcUGCGACCg -3'
miRNA:   3'- ugUUGCGUCUGUUGUA-------------GUU----------ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 26592 0.66 0.972577
Target:  5'- cACGACaCGGACGGCGUguucgaguccugcgCGGUGgUGGCCg -3'
miRNA:   3'- -UGUUGcGUCUGUUGUA--------------GUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 4882 0.66 0.970288
Target:  5'- cCAGCGCGG-CGACG-----GCGGCCu -3'
miRNA:   3'- uGUUGCGUCuGUUGUaguuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 29242 0.66 0.970288
Target:  5'- uACAACGCcGGCcaagGGCGccCAGcGCGGCCg -3'
miRNA:   3'- -UGUUGCGuCUG----UUGUa-GUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 33911 0.66 0.970288
Target:  5'- gGCAAguuCGCcGGCGACAUCAggGCaucGACg -3'
miRNA:   3'- -UGUU---GCGuCUGUUGUAGUuaCG---CUGg -5'
26454 3' -47.7 NC_005357.1 + 14407 0.66 0.970288
Target:  5'- gGCGACGCcGACAugAUCGGcuucuuccaGCG-CCu -3'
miRNA:   3'- -UGUUGCGuCUGUugUAGUUa--------CGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 11355 0.66 0.96995
Target:  5'- uGCAguACGguGGCGaccugcucgcccgGCAccUCGGUGgCGACCu -3'
miRNA:   3'- -UGU--UGCguCUGU-------------UGU--AGUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 38281 0.66 0.966786
Target:  5'- cGCAAgGUGGGCGGCuUCcacuAUGCG-CCg -3'
miRNA:   3'- -UGUUgCGUCUGUUGuAGu---UACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 33640 0.66 0.966786
Target:  5'- cCGGCGCGGcCGACccAUCG-UGCG-CCg -3'
miRNA:   3'- uGUUGCGUCuGUUG--UAGUuACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 18148 0.66 0.966786
Target:  5'- gGCucGCGCAGcuugccgaaAUAGCccuguuUCAGUGCGAUCa -3'
miRNA:   3'- -UGu-UGCGUC---------UGUUGu-----AGUUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 29284 0.66 0.966786
Target:  5'- gACGugGUAGGCGACGaac-UGCuGGCCc -3'
miRNA:   3'- -UGUugCGUCUGUUGUaguuACG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 1460 0.66 0.966786
Target:  5'- gACGGCGCGGuCGGCGgccUCcugGCaGGCCg -3'
miRNA:   3'- -UGUUGCGUCuGUUGU---AGuuaCG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 23097 0.66 0.966786
Target:  5'- cCGACGCcaacGGCGGCGccCAcgGCGACa -3'
miRNA:   3'- uGUUGCGu---CUGUUGUa-GUuaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 13469 0.66 0.966786
Target:  5'- cGCggUGuCGGGCAugAccugggCGAUGcCGACCg -3'
miRNA:   3'- -UGuuGC-GUCUGUugUa-----GUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 14745 0.66 0.966786
Target:  5'- gGCAguacGCGCAGcauuggcgcGCAGCGugUCGGUGuCGAUCu -3'
miRNA:   3'- -UGU----UGCGUC---------UGUUGU--AGUUAC-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.