miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 5' -53.1 NC_005357.1 + 19928 0.66 0.793816
Target:  5'- uUGUCGCCGcCGAacuccuuGUCGGC--CGUGGa -3'
miRNA:   3'- -ACAGCGGUuGCUg------UAGCUGucGCACC- -5'
26456 5' -53.1 NC_005357.1 + 13616 0.66 0.793816
Target:  5'- -cUUGCCGACaGCAUCGGUAGCGg-- -3'
miRNA:   3'- acAGCGGUUGcUGUAGCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 8202 0.66 0.793816
Target:  5'- -uUCGUCAGCGACAU-GGCGGCc--- -3'
miRNA:   3'- acAGCGGUUGCUGUAgCUGUCGcacc -5'
26456 5' -53.1 NC_005357.1 + 8647 0.66 0.793816
Target:  5'- gGUCGCCGgccuucaucGCGcgGUCGGCAuuGCGUGc -3'
miRNA:   3'- aCAGCGGU---------UGCugUAGCUGU--CGCACc -5'
26456 5' -53.1 NC_005357.1 + 35600 0.66 0.783762
Target:  5'- cGUCGCCGAgGGCAaCGACGaaacccgcGcCGUGu -3'
miRNA:   3'- aCAGCGGUUgCUGUaGCUGU--------C-GCACc -5'
26456 5' -53.1 NC_005357.1 + 36350 0.66 0.783762
Target:  5'- cG-CGCuCGACGACuUCGagGCGGUGUGa -3'
miRNA:   3'- aCaGCG-GUUGCUGuAGC--UGUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 5804 0.66 0.783762
Target:  5'- cGgcagCGCCAGCGGauaGUCGGgcaUGGCGUGc -3'
miRNA:   3'- aCa---GCGGUUGCUg--UAGCU---GUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 8904 0.66 0.772513
Target:  5'- aUGgCGCUAucgGCGGCGcgcUCGAUggcuucgGGCGUGGa -3'
miRNA:   3'- -ACaGCGGU---UGCUGU---AGCUG-------UCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 40406 0.66 0.763171
Target:  5'- -aUCGCCugcGCGACuUCGcCAGCGagcgccUGGg -3'
miRNA:   3'- acAGCGGu--UGCUGuAGCuGUCGC------ACC- -5'
26456 5' -53.1 NC_005357.1 + 34424 0.66 0.763171
Target:  5'- cUGgCGCCAAgGGCAcgucCGACGcCGUGGu -3'
miRNA:   3'- -ACaGCGGUUgCUGUa---GCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 34134 0.66 0.763171
Target:  5'- --cCGCUGGCuGCAcugcccCGGCAGCGUGGc -3'
miRNA:   3'- acaGCGGUUGcUGUa-----GCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 19593 0.67 0.752659
Target:  5'- cG-CGCUGuCGGCuGUCGGCAGCGcGGc -3'
miRNA:   3'- aCaGCGGUuGCUG-UAGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 5617 0.67 0.752659
Target:  5'- gGUaGCC-ACGGCGUCGAUguuGGCGaGGu -3'
miRNA:   3'- aCAgCGGuUGCUGUAGCUG---UCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 36996 0.67 0.742017
Target:  5'- uUGUCGCaAACagUAUCGGCAaCGUGGa -3'
miRNA:   3'- -ACAGCGgUUGcuGUAGCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 4876 0.67 0.742017
Target:  5'- cGUUGcCCAGCG-CggCGACGGCGg-- -3'
miRNA:   3'- aCAGC-GGUUGCuGuaGCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 18763 0.67 0.740947
Target:  5'- -uUUGCCGGCGAuuucuucCAUCGuCAGCGUcgaGGc -3'
miRNA:   3'- acAGCGGUUGCU-------GUAGCuGUCGCA---CC- -5'
26456 5' -53.1 NC_005357.1 + 18467 0.67 0.73126
Target:  5'- cGgCGCCGGCGGCGUCGGCcGauucguccacCGUGa -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUGuC----------GCACc -5'
26456 5' -53.1 NC_005357.1 + 8996 0.67 0.73126
Target:  5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3'
miRNA:   3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5'
26456 5' -53.1 NC_005357.1 + 30379 0.67 0.73126
Target:  5'- cGgCGCCAuCGACuUCGACAcGC-UGGg -3'
miRNA:   3'- aCaGCGGUuGCUGuAGCUGU-CGcACC- -5'
26456 5' -53.1 NC_005357.1 + 40560 0.67 0.720399
Target:  5'- gGUCGCCAAUuuCAUCaagcACGGCGaGGa -3'
miRNA:   3'- aCAGCGGUUGcuGUAGc---UGUCGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.