Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26461 | 3' | -55.3 | NC_005357.1 | + | 30215 | 0.66 | 0.668976 |
Target: 5'- gUGCUGCG-UC-CcGACCAggGGCaGGCa -3' miRNA: 3'- -ACGACGCaAGcGuCUGGUagCUG-CCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 28088 | 0.66 | 0.668976 |
Target: 5'- gGCcGCGgcgUCGUAuuCCGUCG-CGGUg -3' miRNA: 3'- aCGaCGCa--AGCGUcuGGUAGCuGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 30833 | 0.66 | 0.668976 |
Target: 5'- cUGCUGCccg-GCGG-CCAgcCGGCGGCc -3' miRNA: 3'- -ACGACGcaagCGUCuGGUa-GCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 13947 | 0.66 | 0.657819 |
Target: 5'- aUGCcgaGCGgaUGCucGACCAcuacgCGACGGCc -3' miRNA: 3'- -ACGa--CGCaaGCGu-CUGGUa----GCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 41284 | 0.66 | 0.657819 |
Target: 5'- cGacgGCGagCGCAaacGGCCGcugcucaugaUCGACGGCa -3' miRNA: 3'- aCga-CGCaaGCGU---CUGGU----------AGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 8559 | 0.66 | 0.654466 |
Target: 5'- cGCUcgaccucauccuggGCG-UCGUAGGCCGcgCGuGCGGCc -3' miRNA: 3'- aCGA--------------CGCaAGCGUCUGGUa-GC-UGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 34204 | 0.66 | 0.646637 |
Target: 5'- cUGCUGaCGgcCGCcGACCAgcgCGACuacgaGGCc -3' miRNA: 3'- -ACGAC-GCaaGCGuCUGGUa--GCUG-----CCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 5841 | 0.66 | 0.646637 |
Target: 5'- aGCaccgUGCGgUCGaaguGGCUAUUGugGGCg -3' miRNA: 3'- aCG----ACGCaAGCgu--CUGGUAGCugCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 35314 | 0.66 | 0.646637 |
Target: 5'- cGCUGgGcaucaCGCAGuCCAUcgugcgCGugGGCg -3' miRNA: 3'- aCGACgCaa---GCGUCuGGUA------GCugCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 8878 | 0.66 | 0.639921 |
Target: 5'- cGaaGCGggCGCGGGCauCAuugugaauggcgcuaUCGGCGGCg -3' miRNA: 3'- aCgaCGCaaGCGUCUG--GU---------------AGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 8187 | 0.66 | 0.639921 |
Target: 5'- aUGCUGCcggcgauuucaucgCGCAcGGCCucguagucgcgcugGUCGGCGGCc -3' miRNA: 3'- -ACGACGcaa-----------GCGU-CUGG--------------UAGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 19586 | 0.66 | 0.635442 |
Target: 5'- cGCaGCGcgCGCugucGGCUGUCGGCaGCg -3' miRNA: 3'- aCGaCGCaaGCGu---CUGGUAGCUGcCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 38548 | 0.66 | 0.624243 |
Target: 5'- gGCgGCGacggcagCGCGG-CCuacagCGACGGCg -3' miRNA: 3'- aCGaCGCaa-----GCGUCuGGua---GCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 24332 | 0.66 | 0.624243 |
Target: 5'- cGCgaagGCGUccugguUCGCGccGGCU-UCGGCGGCc -3' miRNA: 3'- aCGa---CGCA------AGCGU--CUGGuAGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 37021 | 0.66 | 0.624243 |
Target: 5'- gUGgaGCGUaCGCAGaagguGCUcgCGGCGcGCa -3' miRNA: 3'- -ACgaCGCAaGCGUC-----UGGuaGCUGC-CG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 38933 | 0.66 | 0.623124 |
Target: 5'- cGCUGCGcUCugguacaGCGGGCCGUCGuucuCGuucGCg -3' miRNA: 3'- aCGACGCaAG-------CGUCUGGUAGCu---GC---CG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 32005 | 0.67 | 0.601878 |
Target: 5'- aGCUGUuggaaaugaaaaGUg-GCgAGGCCAUCGGCGcGCu -3' miRNA: 3'- aCGACG------------CAagCG-UCUGGUAGCUGC-CG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 26292 | 0.67 | 0.601878 |
Target: 5'- aGCgUGCGgcCGCAGuccuacgucgggGCCAcCGACGuGCa -3' miRNA: 3'- aCG-ACGCaaGCGUC------------UGGUaGCUGC-CG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 18875 | 0.67 | 0.601878 |
Target: 5'- cUGCcgGCGaugUCgGCcgAGGCCAUCGACcGCg -3' miRNA: 3'- -ACGa-CGCa--AG-CG--UCUGGUAGCUGcCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 38229 | 0.67 | 0.601878 |
Target: 5'- cGCgacGUGcUCGCGGccaacaugcccGCCAUCGagGCGGCc -3' miRNA: 3'- aCGa--CGCaAGCGUC-----------UGGUAGC--UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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