miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 3' -55.3 NC_005357.1 + 30215 0.66 0.668976
Target:  5'- gUGCUGCG-UC-CcGACCAggGGCaGGCa -3'
miRNA:   3'- -ACGACGCaAGcGuCUGGUagCUG-CCG- -5'
26461 3' -55.3 NC_005357.1 + 28088 0.66 0.668976
Target:  5'- gGCcGCGgcgUCGUAuuCCGUCG-CGGUg -3'
miRNA:   3'- aCGaCGCa--AGCGUcuGGUAGCuGCCG- -5'
26461 3' -55.3 NC_005357.1 + 30833 0.66 0.668976
Target:  5'- cUGCUGCccg-GCGG-CCAgcCGGCGGCc -3'
miRNA:   3'- -ACGACGcaagCGUCuGGUa-GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 13947 0.66 0.657819
Target:  5'- aUGCcgaGCGgaUGCucGACCAcuacgCGACGGCc -3'
miRNA:   3'- -ACGa--CGCaaGCGu-CUGGUa----GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 41284 0.66 0.657819
Target:  5'- cGacgGCGagCGCAaacGGCCGcugcucaugaUCGACGGCa -3'
miRNA:   3'- aCga-CGCaaGCGU---CUGGU----------AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 8559 0.66 0.654466
Target:  5'- cGCUcgaccucauccuggGCG-UCGUAGGCCGcgCGuGCGGCc -3'
miRNA:   3'- aCGA--------------CGCaAGCGUCUGGUa-GC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 34204 0.66 0.646637
Target:  5'- cUGCUGaCGgcCGCcGACCAgcgCGACuacgaGGCc -3'
miRNA:   3'- -ACGAC-GCaaGCGuCUGGUa--GCUG-----CCG- -5'
26461 3' -55.3 NC_005357.1 + 5841 0.66 0.646637
Target:  5'- aGCaccgUGCGgUCGaaguGGCUAUUGugGGCg -3'
miRNA:   3'- aCG----ACGCaAGCgu--CUGGUAGCugCCG- -5'
26461 3' -55.3 NC_005357.1 + 35314 0.66 0.646637
Target:  5'- cGCUGgGcaucaCGCAGuCCAUcgugcgCGugGGCg -3'
miRNA:   3'- aCGACgCaa---GCGUCuGGUA------GCugCCG- -5'
26461 3' -55.3 NC_005357.1 + 8878 0.66 0.639921
Target:  5'- cGaaGCGggCGCGGGCauCAuugugaauggcgcuaUCGGCGGCg -3'
miRNA:   3'- aCgaCGCaaGCGUCUG--GU---------------AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 8187 0.66 0.639921
Target:  5'- aUGCUGCcggcgauuucaucgCGCAcGGCCucguagucgcgcugGUCGGCGGCc -3'
miRNA:   3'- -ACGACGcaa-----------GCGU-CUGG--------------UAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 19586 0.66 0.635442
Target:  5'- cGCaGCGcgCGCugucGGCUGUCGGCaGCg -3'
miRNA:   3'- aCGaCGCaaGCGu---CUGGUAGCUGcCG- -5'
26461 3' -55.3 NC_005357.1 + 38548 0.66 0.624243
Target:  5'- gGCgGCGacggcagCGCGG-CCuacagCGACGGCg -3'
miRNA:   3'- aCGaCGCaa-----GCGUCuGGua---GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 24332 0.66 0.624243
Target:  5'- cGCgaagGCGUccugguUCGCGccGGCU-UCGGCGGCc -3'
miRNA:   3'- aCGa---CGCA------AGCGU--CUGGuAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 37021 0.66 0.624243
Target:  5'- gUGgaGCGUaCGCAGaagguGCUcgCGGCGcGCa -3'
miRNA:   3'- -ACgaCGCAaGCGUC-----UGGuaGCUGC-CG- -5'
26461 3' -55.3 NC_005357.1 + 38933 0.66 0.623124
Target:  5'- cGCUGCGcUCugguacaGCGGGCCGUCGuucuCGuucGCg -3'
miRNA:   3'- aCGACGCaAG-------CGUCUGGUAGCu---GC---CG- -5'
26461 3' -55.3 NC_005357.1 + 32005 0.67 0.601878
Target:  5'- aGCUGUuggaaaugaaaaGUg-GCgAGGCCAUCGGCGcGCu -3'
miRNA:   3'- aCGACG------------CAagCG-UCUGGUAGCUGC-CG- -5'
26461 3' -55.3 NC_005357.1 + 26292 0.67 0.601878
Target:  5'- aGCgUGCGgcCGCAGuccuacgucgggGCCAcCGACGuGCa -3'
miRNA:   3'- aCG-ACGCaaGCGUC------------UGGUaGCUGC-CG- -5'
26461 3' -55.3 NC_005357.1 + 18875 0.67 0.601878
Target:  5'- cUGCcgGCGaugUCgGCcgAGGCCAUCGACcGCg -3'
miRNA:   3'- -ACGa-CGCa--AG-CG--UCUGGUAGCUGcCG- -5'
26461 3' -55.3 NC_005357.1 + 38229 0.67 0.601878
Target:  5'- cGCgacGUGcUCGCGGccaacaugcccGCCAUCGagGCGGCc -3'
miRNA:   3'- aCGa--CGCaAGCGUC-----------UGGUAGC--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.