miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 5' -57.7 NC_005357.1 + 41466 0.7 0.2965
Target:  5'- aGuGGCuGCAAGCUGCcGugGGCacCGCg -3'
miRNA:   3'- aCuUCG-CGUUCGACGaCugCCG--GCGg -5'
26462 5' -57.7 NC_005357.1 + 41435 0.69 0.319647
Target:  5'- aGuGGCGCGGGCagcggGCUGACGGUgaaggGCUg -3'
miRNA:   3'- aCuUCGCGUUCGa----CGACUGCCGg----CGG- -5'
26462 5' -57.7 NC_005357.1 + 41387 0.66 0.454838
Target:  5'- cGcGGCGaCAuGCUGCcGcCGGCCGUg -3'
miRNA:   3'- aCuUCGC-GUuCGACGaCuGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 41290 0.69 0.326851
Target:  5'- -cGAGCGCAAacggccGCUGCUcaugaucGACGGCaaGCCu -3'
miRNA:   3'- acUUCGCGUU------CGACGA-------CUGCCGg-CGG- -5'
26462 5' -57.7 NC_005357.1 + 40773 0.68 0.378807
Target:  5'- cGAGGUGCAAGacCUGCUacUGGaaGCCa -3'
miRNA:   3'- aCUUCGCGUUC--GACGAcuGCCggCGG- -5'
26462 5' -57.7 NC_005357.1 + 39491 0.66 0.48541
Target:  5'- gUGccGCGCGAcGC-GgUGugGGCCGgCa -3'
miRNA:   3'- -ACuuCGCGUU-CGaCgACugCCGGCgG- -5'
26462 5' -57.7 NC_005357.1 + 38818 0.7 0.267693
Target:  5'- gUGAauGGCGCAuccgaauacacGGCcaacaCUGGCGGCCGCg -3'
miRNA:   3'- -ACU--UCGCGU-----------UCGac---GACUGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 38170 0.67 0.41576
Target:  5'- ----aUGCcGGC-GCUGACGGCCGgCa -3'
miRNA:   3'- acuucGCGuUCGaCGACUGCCGGCgG- -5'
26462 5' -57.7 NC_005357.1 + 37917 0.66 0.48541
Target:  5'- cGAuGCGcCAAGC-GcCUGugGcGCCGCg -3'
miRNA:   3'- aCUuCGC-GUUCGaC-GACugC-CGGCGg -5'
26462 5' -57.7 NC_005357.1 + 37320 0.68 0.344123
Target:  5'- --cGGCGCcAGCcgcaccggacGCUGGgcCGGCCGCCu -3'
miRNA:   3'- acuUCGCGuUCGa---------CGACU--GCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 37274 0.8 0.050826
Target:  5'- -aGGGCGUGAGCaGC-GACGGCCGCCu -3'
miRNA:   3'- acUUCGCGUUCGaCGaCUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 37021 0.68 0.352576
Target:  5'- gUGGAGCGUAcgcagaAGgUGCUcGCGGCgCGCa -3'
miRNA:   3'- -ACUUCGCGU------UCgACGAcUGCCG-GCGg -5'
26462 5' -57.7 NC_005357.1 + 36598 0.66 0.495818
Target:  5'- cGAc-CGCAcGgUGCUG-CGGCaCGCCa -3'
miRNA:   3'- aCUucGCGUuCgACGACuGCCG-GCGG- -5'
26462 5' -57.7 NC_005357.1 + 36094 0.66 0.475108
Target:  5'- -cGGGCGCuuuGGCUGg-GGCGGaacgCGCCg -3'
miRNA:   3'- acUUCGCGu--UCGACgaCUGCCg---GCGG- -5'
26462 5' -57.7 NC_005357.1 + 35804 0.7 0.289079
Target:  5'- -cAAGCGCGcGaaGCUGGCGGCggacuaCGCCa -3'
miRNA:   3'- acUUCGCGUuCgaCGACUGCCG------GCGG- -5'
26462 5' -57.7 NC_005357.1 + 34997 0.67 0.396084
Target:  5'- cGAAGC-CGAaCUGCUGGcCGGCCauccgguGCCc -3'
miRNA:   3'- aCUUCGcGUUcGACGACU-GCCGG-------CGG- -5'
26462 5' -57.7 NC_005357.1 + 34713 0.69 0.301023
Target:  5'- -cGAGCGUgcGCUGCaGuucaucggcaagcCGGCCGCCg -3'
miRNA:   3'- acUUCGCGuuCGACGaCu------------GCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 34518 0.73 0.169861
Target:  5'- -cGAGCGCAacgAGCaGCUGGCGaucuacgcacgcGCCGCCc -3'
miRNA:   3'- acUUCGCGU---UCGaCGACUGC------------CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 34379 0.68 0.344123
Target:  5'- gGgcGCGCGucauggacGGCgGCaagGACGGCgGCCc -3'
miRNA:   3'- aCuuCGCGU--------UCGaCGa--CUGCCGgCGG- -5'
26462 5' -57.7 NC_005357.1 + 34192 1.12 0.000204
Target:  5'- uUGAAGCGCAAGCUGCUGACGGCCGCCg -3'
miRNA:   3'- -ACUUCGCGUUCGACGACUGCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.