Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26463 | 5' | -54.3 | NC_005357.1 | + | 18668 | 0.66 | 0.685017 |
Target: 5'- gGCGCaucgGcCCGGUGGCGCCGgcauggCGCu-- -3' miRNA: 3'- -CGCGg---C-GGCUAUCGCGGUaa----GUGuua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 2153 | 0.66 | 0.685017 |
Target: 5'- cGCGCCGCCGuacacguUGGCGaacagUUGCGAg -3' miRNA: 3'- -CGCGGCGGCu------AUCGCggua-AGUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 41756 | 0.66 | 0.685017 |
Target: 5'- gGCGCCGCCGuaGGCgGCCuggUgGCu-- -3' miRNA: 3'- -CGCGGCGGCuaUCG-CGGua-AgUGuua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 13889 | 0.66 | 0.685017 |
Target: 5'- gGCgGCCGCaaGGUcGUGCCGUUCaACAAg -3' miRNA: 3'- -CG-CGGCGg-CUAuCGCGGUAAG-UGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 25028 | 0.66 | 0.682757 |
Target: 5'- gGCGCCGCUGAaucgaagcgguGCGUCgg-CGCGAUg -3' miRNA: 3'- -CGCGGCGGCUau---------CGCGGuaaGUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 38862 | 0.66 | 0.673698 |
Target: 5'- cGCGUCGCUGAaauuuaugcGGCGCgGUUgGCGGg -3' miRNA: 3'- -CGCGGCGGCUa--------UCGCGgUAAgUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 17205 | 0.66 | 0.673698 |
Target: 5'- cCGCCGCCGAaggAGCGUugCAggaCGCGGa -3' miRNA: 3'- cGCGGCGGCUa--UCGCG--GUaa-GUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 16070 | 0.66 | 0.662337 |
Target: 5'- -gGCCGCCGcgcgcGGCGCCGUagAUggUc -3' miRNA: 3'- cgCGGCGGCua---UCGCGGUAagUGuuA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 26862 | 0.66 | 0.662337 |
Target: 5'- cGCGUCGUCacuGAcGGCGCCAUUgACc-- -3' miRNA: 3'- -CGCGGCGG---CUaUCGCGGUAAgUGuua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 8620 | 0.66 | 0.662337 |
Target: 5'- gGCGUgGCCGGUA-CGCCcUUCGgAAa -3' miRNA: 3'- -CGCGgCGGCUAUcGCGGuAAGUgUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 42033 | 0.66 | 0.662337 |
Target: 5'- cGUGCUGCUGGUGGgCGCCcUggGCAu- -3' miRNA: 3'- -CGCGGCGGCUAUC-GCGGuAagUGUua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 27596 | 0.66 | 0.650945 |
Target: 5'- gGCGgCGCCaGAUGGCGUgGUcgUCGCc-- -3' miRNA: 3'- -CGCgGCGG-CUAUCGCGgUA--AGUGuua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 4016 | 0.66 | 0.650945 |
Target: 5'- cGCGCCgGCCaccAGCGUCAUgccgCGCGGg -3' miRNA: 3'- -CGCGG-CGGcuaUCGCGGUAa---GUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 15431 | 0.66 | 0.639534 |
Target: 5'- cGCGCCGCUG-UAGCcCCAguucUUGCAGc -3' miRNA: 3'- -CGCGGCGGCuAUCGcGGUa---AGUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 17122 | 0.66 | 0.639534 |
Target: 5'- aGCGCCGgUGGcAGgGCCGgccgCACGAc -3' miRNA: 3'- -CGCGGCgGCUaUCgCGGUaa--GUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 14849 | 0.66 | 0.639534 |
Target: 5'- gGCGCCGCCugcugccGGUGCCcUUUACGc- -3' miRNA: 3'- -CGCGGCGGcua----UCGCGGuAAGUGUua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 3566 | 0.66 | 0.639534 |
Target: 5'- cGCGCCGCauaaauuucagCGAc-GCGCCGggUCACGu- -3' miRNA: 3'- -CGCGGCG-----------GCUauCGCGGUa-AGUGUua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 15767 | 0.66 | 0.639534 |
Target: 5'- uUGCCGCCaAUGGUGCgAcgCACGAc -3' miRNA: 3'- cGCGGCGGcUAUCGCGgUaaGUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 23764 | 0.66 | 0.639534 |
Target: 5'- gGCGCCaccggGCCGAU-GCGCCGcggcUACGAa -3' miRNA: 3'- -CGCGG-----CGGCUAuCGCGGUaa--GUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 9155 | 0.67 | 0.628117 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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