miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 5' -54.3 NC_005357.1 + 13889 0.66 0.685017
Target:  5'- gGCgGCCGCaaGGUcGUGCCGUUCaACAAg -3'
miRNA:   3'- -CG-CGGCGg-CUAuCGCGGUAAG-UGUUa -5'
26463 5' -54.3 NC_005357.1 + 41756 0.66 0.685017
Target:  5'- gGCGCCGCCGuaGGCgGCCuggUgGCu-- -3'
miRNA:   3'- -CGCGGCGGCuaUCG-CGGua-AgUGuua -5'
26463 5' -54.3 NC_005357.1 + 18668 0.66 0.685017
Target:  5'- gGCGCaucgGcCCGGUGGCGCCGgcauggCGCu-- -3'
miRNA:   3'- -CGCGg---C-GGCUAUCGCGGUaa----GUGuua -5'
26463 5' -54.3 NC_005357.1 + 2153 0.66 0.685017
Target:  5'- cGCGCCGCCGuacacguUGGCGaacagUUGCGAg -3'
miRNA:   3'- -CGCGGCGGCu------AUCGCggua-AGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 25028 0.66 0.682757
Target:  5'- gGCGCCGCUGAaucgaagcgguGCGUCgg-CGCGAUg -3'
miRNA:   3'- -CGCGGCGGCUau---------CGCGGuaaGUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 17205 0.66 0.673698
Target:  5'- cCGCCGCCGAaggAGCGUugCAggaCGCGGa -3'
miRNA:   3'- cGCGGCGGCUa--UCGCG--GUaa-GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 38862 0.66 0.673698
Target:  5'- cGCGUCGCUGAaauuuaugcGGCGCgGUUgGCGGg -3'
miRNA:   3'- -CGCGGCGGCUa--------UCGCGgUAAgUGUUa -5'
26463 5' -54.3 NC_005357.1 + 16070 0.66 0.662337
Target:  5'- -gGCCGCCGcgcgcGGCGCCGUagAUggUc -3'
miRNA:   3'- cgCGGCGGCua---UCGCGGUAagUGuuA- -5'
26463 5' -54.3 NC_005357.1 + 8620 0.66 0.662337
Target:  5'- gGCGUgGCCGGUA-CGCCcUUCGgAAa -3'
miRNA:   3'- -CGCGgCGGCUAUcGCGGuAAGUgUUa -5'
26463 5' -54.3 NC_005357.1 + 42033 0.66 0.662337
Target:  5'- cGUGCUGCUGGUGGgCGCCcUggGCAu- -3'
miRNA:   3'- -CGCGGCGGCUAUC-GCGGuAagUGUua -5'
26463 5' -54.3 NC_005357.1 + 26862 0.66 0.662337
Target:  5'- cGCGUCGUCacuGAcGGCGCCAUUgACc-- -3'
miRNA:   3'- -CGCGGCGG---CUaUCGCGGUAAgUGuua -5'
26463 5' -54.3 NC_005357.1 + 4016 0.66 0.650945
Target:  5'- cGCGCCgGCCaccAGCGUCAUgccgCGCGGg -3'
miRNA:   3'- -CGCGG-CGGcuaUCGCGGUAa---GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 27596 0.66 0.650945
Target:  5'- gGCGgCGCCaGAUGGCGUgGUcgUCGCc-- -3'
miRNA:   3'- -CGCgGCGG-CUAUCGCGgUA--AGUGuua -5'
26463 5' -54.3 NC_005357.1 + 3566 0.66 0.639534
Target:  5'- cGCGCCGCauaaauuucagCGAc-GCGCCGggUCACGu- -3'
miRNA:   3'- -CGCGGCG-----------GCUauCGCGGUa-AGUGUua -5'
26463 5' -54.3 NC_005357.1 + 15767 0.66 0.639534
Target:  5'- uUGCCGCCaAUGGUGCgAcgCACGAc -3'
miRNA:   3'- cGCGGCGGcUAUCGCGgUaaGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 14849 0.66 0.639534
Target:  5'- gGCGCCGCCugcugccGGUGCCcUUUACGc- -3'
miRNA:   3'- -CGCGGCGGcua----UCGCGGuAAGUGUua -5'
26463 5' -54.3 NC_005357.1 + 17122 0.66 0.639534
Target:  5'- aGCGCCGgUGGcAGgGCCGgccgCACGAc -3'
miRNA:   3'- -CGCGGCgGCUaUCgCGGUaa--GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 15431 0.66 0.639534
Target:  5'- cGCGCCGCUG-UAGCcCCAguucUUGCAGc -3'
miRNA:   3'- -CGCGGCGGCuAUCGcGGUa---AGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 23764 0.66 0.639534
Target:  5'- gGCGCCaccggGCCGAU-GCGCCGcggcUACGAa -3'
miRNA:   3'- -CGCGG-----CGGCUAuCGCGGUaa--GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 9155 0.67 0.628117
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.