Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26467 | 5' | -64.6 | NC_005357.1 | + | 2722 | 0.66 | 0.23611 |
Target: 5'- cGUUGGCCGGacgcuugagcgcGGCCcg--GCGCUGCUCg -3' miRNA: 3'- -UAGCCGGCU------------CCGGcacgCGCGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 34473 | 0.66 | 0.23611 |
Target: 5'- -gCGcGCCGAGGCCacggGCaaGCUGUCg -3' miRNA: 3'- uaGC-CGGCUCCGGca--CGcgCGACGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 41307 | 0.66 | 0.23611 |
Target: 5'- -aCGGuuacaCCG-GGCCGaUGCGCGacaUGCCg -3' miRNA: 3'- uaGCC-----GGCuCCGGC-ACGCGCg--ACGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 41596 | 0.66 | 0.23611 |
Target: 5'- gGUCGGCUc--GCUGUcucugcGCGCGCUcaaGCCCa -3' miRNA: 3'- -UAGCCGGcucCGGCA------CGCGCGA---CGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 39991 | 0.66 | 0.230234 |
Target: 5'- -gUGGCgccgaucuuCGAGGCCG-GCcUGCUGCCg -3' miRNA: 3'- uaGCCG---------GCUCCGGCaCGcGCGACGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 31258 | 0.66 | 0.230234 |
Target: 5'- -aCGGCCGAccaGCgcacgcaaCGUGCGCagGCgGCCCa -3' miRNA: 3'- uaGCCGGCUc--CG--------GCACGCG--CGaCGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 20113 | 0.66 | 0.230234 |
Target: 5'- uUCGGCac-GGCCagcagcauCGUGCUGCCCg -3' miRNA: 3'- uAGCCGgcuCCGGcac-----GCGCGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 14133 | 0.66 | 0.228496 |
Target: 5'- cGUCGGCCagcggcuugccuuccGGCCGUuccaGCGCGUUGauaCCCu -3' miRNA: 3'- -UAGCCGGcu-------------CCGGCA----CGCGCGAC---GGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 31208 | 0.66 | 0.218853 |
Target: 5'- -aCGGUCGAGGgCGaaagcaUgaagaaccccgGCGCGCgGCCCa -3' miRNA: 3'- uaGCCGGCUCCgGC------A-----------CGCGCGaCGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 27443 | 0.66 | 0.218853 |
Target: 5'- -gCGGCCGcAGGCCcUG-GCGCugguaUGCCa -3' miRNA: 3'- uaGCCGGC-UCCGGcACgCGCG-----ACGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 24719 | 0.66 | 0.218853 |
Target: 5'- aGUCGGUCG-GGCCGcuuccaccGCGC-CUGCgCg -3' miRNA: 3'- -UAGCCGGCuCCGGCa-------CGCGcGACGgG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 34438 | 0.66 | 0.213344 |
Target: 5'- -aCGuCCGAcGCCGUgGUGCuGCUGCCUg -3' miRNA: 3'- uaGCcGGCUcCGGCA-CGCG-CGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 13165 | 0.66 | 0.213344 |
Target: 5'- uGUCGGCC-AGuGUCG-GcCGCGCUgggcGCCCu -3' miRNA: 3'- -UAGCCGGcUC-CGGCaC-GCGCGA----CGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 10708 | 0.66 | 0.213344 |
Target: 5'- -aCGGCCucGGCCGauugcuugaaUGCGUcgucgccuuGCUGCUCg -3' miRNA: 3'- uaGCCGGcuCCGGC----------ACGCG---------CGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 34224 | 0.66 | 0.213344 |
Target: 5'- -gCGcGacuaCGAGGCCGUGCGCGaugaaaucGCCg -3' miRNA: 3'- uaGC-Cg---GCUCCGGCACGCGCga------CGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 4360 | 0.66 | 0.213344 |
Target: 5'- aAUCGGCCGgacggcAGGCgGaUGCGCaGCcagGCgCCg -3' miRNA: 3'- -UAGCCGGC------UCCGgC-ACGCG-CGa--CG-GG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 12456 | 0.66 | 0.213344 |
Target: 5'- -aCGGCUGcauccAGGCCGUcGUGCGCcGCg- -3' miRNA: 3'- uaGCCGGC-----UCCGGCA-CGCGCGaCGgg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 20259 | 0.66 | 0.207955 |
Target: 5'- gGUCGGCUGuugcugcuguuGGCCGU---CGUUGCCCg -3' miRNA: 3'- -UAGCCGGCu----------CCGGCAcgcGCGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 8217 | 0.66 | 0.207955 |
Target: 5'- -gCGGCC-AGuuCGUGCGCGgCcgUGCCCu -3' miRNA: 3'- uaGCCGGcUCcgGCACGCGC-G--ACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 13642 | 0.66 | 0.206362 |
Target: 5'- gAUCGGCaaccagggcaagcgCGAcGCCGUGCGCGCcgagaagcGCaCCg -3' miRNA: 3'- -UAGCCG--------------GCUcCGGCACGCGCGa-------CG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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