miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 5' -64.6 NC_005357.1 + 2722 0.66 0.23611
Target:  5'- cGUUGGCCGGacgcuugagcgcGGCCcg--GCGCUGCUCg -3'
miRNA:   3'- -UAGCCGGCU------------CCGGcacgCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 34473 0.66 0.23611
Target:  5'- -gCGcGCCGAGGCCacggGCaaGCUGUCg -3'
miRNA:   3'- uaGC-CGGCUCCGGca--CGcgCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 41307 0.66 0.23611
Target:  5'- -aCGGuuacaCCG-GGCCGaUGCGCGacaUGCCg -3'
miRNA:   3'- uaGCC-----GGCuCCGGC-ACGCGCg--ACGGg -5'
26467 5' -64.6 NC_005357.1 + 41596 0.66 0.23611
Target:  5'- gGUCGGCUc--GCUGUcucugcGCGCGCUcaaGCCCa -3'
miRNA:   3'- -UAGCCGGcucCGGCA------CGCGCGA---CGGG- -5'
26467 5' -64.6 NC_005357.1 + 20113 0.66 0.230234
Target:  5'- uUCGGCac-GGCCagcagcauCGUGCUGCCCg -3'
miRNA:   3'- uAGCCGgcuCCGGcac-----GCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 39991 0.66 0.230234
Target:  5'- -gUGGCgccgaucuuCGAGGCCG-GCcUGCUGCCg -3'
miRNA:   3'- uaGCCG---------GCUCCGGCaCGcGCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 31258 0.66 0.230234
Target:  5'- -aCGGCCGAccaGCgcacgcaaCGUGCGCagGCgGCCCa -3'
miRNA:   3'- uaGCCGGCUc--CG--------GCACGCG--CGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 14133 0.66 0.228496
Target:  5'- cGUCGGCCagcggcuugccuuccGGCCGUuccaGCGCGUUGauaCCCu -3'
miRNA:   3'- -UAGCCGGcu-------------CCGGCA----CGCGCGAC---GGG- -5'
26467 5' -64.6 NC_005357.1 + 31208 0.66 0.218853
Target:  5'- -aCGGUCGAGGgCGaaagcaUgaagaaccccgGCGCGCgGCCCa -3'
miRNA:   3'- uaGCCGGCUCCgGC------A-----------CGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 27443 0.66 0.218853
Target:  5'- -gCGGCCGcAGGCCcUG-GCGCugguaUGCCa -3'
miRNA:   3'- uaGCCGGC-UCCGGcACgCGCG-----ACGGg -5'
26467 5' -64.6 NC_005357.1 + 24719 0.66 0.218853
Target:  5'- aGUCGGUCG-GGCCGcuuccaccGCGC-CUGCgCg -3'
miRNA:   3'- -UAGCCGGCuCCGGCa-------CGCGcGACGgG- -5'
26467 5' -64.6 NC_005357.1 + 4360 0.66 0.213344
Target:  5'- aAUCGGCCGgacggcAGGCgGaUGCGCaGCcagGCgCCg -3'
miRNA:   3'- -UAGCCGGC------UCCGgC-ACGCG-CGa--CG-GG- -5'
26467 5' -64.6 NC_005357.1 + 34224 0.66 0.213344
Target:  5'- -gCGcGacuaCGAGGCCGUGCGCGaugaaaucGCCg -3'
miRNA:   3'- uaGC-Cg---GCUCCGGCACGCGCga------CGGg -5'
26467 5' -64.6 NC_005357.1 + 12456 0.66 0.213344
Target:  5'- -aCGGCUGcauccAGGCCGUcGUGCGCcGCg- -3'
miRNA:   3'- uaGCCGGC-----UCCGGCA-CGCGCGaCGgg -5'
26467 5' -64.6 NC_005357.1 + 10708 0.66 0.213344
Target:  5'- -aCGGCCucGGCCGauugcuugaaUGCGUcgucgccuuGCUGCUCg -3'
miRNA:   3'- uaGCCGGcuCCGGC----------ACGCG---------CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 13165 0.66 0.213344
Target:  5'- uGUCGGCC-AGuGUCG-GcCGCGCUgggcGCCCu -3'
miRNA:   3'- -UAGCCGGcUC-CGGCaC-GCGCGA----CGGG- -5'
26467 5' -64.6 NC_005357.1 + 34438 0.66 0.213344
Target:  5'- -aCGuCCGAcGCCGUgGUGCuGCUGCCUg -3'
miRNA:   3'- uaGCcGGCUcCGGCA-CGCG-CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 20259 0.66 0.207955
Target:  5'- gGUCGGCUGuugcugcuguuGGCCGU---CGUUGCCCg -3'
miRNA:   3'- -UAGCCGGCu----------CCGGCAcgcGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 8217 0.66 0.207955
Target:  5'- -gCGGCC-AGuuCGUGCGCGgCcgUGCCCu -3'
miRNA:   3'- uaGCCGGcUCcgGCACGCGC-G--ACGGG- -5'
26467 5' -64.6 NC_005357.1 + 13642 0.66 0.206362
Target:  5'- gAUCGGCaaccagggcaagcgCGAcGCCGUGCGCGCcgagaagcGCaCCg -3'
miRNA:   3'- -UAGCCG--------------GCUcCGGCACGCGCGa-------CG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.