miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 5' -64.6 NC_005357.1 + 34563 0.68 0.160281
Target:  5'- cAUCGGCCGAaGCC-UGaacCGCGaaGCCCg -3'
miRNA:   3'- -UAGCCGGCUcCGGcAC---GCGCgaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 32023 0.69 0.129485
Target:  5'- -gUGG-CGAGGCCaucgGCGCGCUGCa- -3'
miRNA:   3'- uaGCCgGCUCCGGca--CGCGCGACGgg -5'
26467 5' -64.6 NC_005357.1 + 41307 0.66 0.23611
Target:  5'- -aCGGuuacaCCG-GGCCGaUGCGCGacaUGCCg -3'
miRNA:   3'- uaGCC-----GGCuCCGGC-ACGCGCg--ACGGg -5'
26467 5' -64.6 NC_005357.1 + 4360 0.66 0.213344
Target:  5'- aAUCGGCCGgacggcAGGCgGaUGCGCaGCcagGCgCCg -3'
miRNA:   3'- -UAGCCGGC------UCCGgC-ACGCG-CGa--CG-GG- -5'
26467 5' -64.6 NC_005357.1 + 4552 0.67 0.178042
Target:  5'- uUgGGCuUGAGGCCGaagucGCcgagGCGCUGCUCg -3'
miRNA:   3'- uAgCCG-GCUCCGGCa----CG----CGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 33578 0.69 0.122688
Target:  5'- -gCGaCCGAGGCCaa-CGCGCUGgCCCg -3'
miRNA:   3'- uaGCcGGCUCCGGcacGCGCGAC-GGG- -5'
26467 5' -64.6 NC_005357.1 + 34224 0.66 0.213344
Target:  5'- -gCGcGacuaCGAGGCCGUGCGCGaugaaaucGCCg -3'
miRNA:   3'- uaGC-Cg---GCUCCGGCACGCGCga------CGGg -5'
26467 5' -64.6 NC_005357.1 + 14729 0.7 0.119415
Target:  5'- -gCGaGCCGcuGCCG-GCGCGCgGCCUg -3'
miRNA:   3'- uaGC-CGGCucCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 14935 0.7 0.118449
Target:  5'- -gCGGCCGAGGCCGccggcauccucgcgUggugcguggcgGCGCGCUGgCa -3'
miRNA:   3'- uaGCCGGCUCCGGC--------------A-----------CGCGCGACgGg -5'
26467 5' -64.6 NC_005357.1 + 17343 0.67 0.178042
Target:  5'- -aCGGCgCcGGGCgCGcUGCGCuggguggcgauGCUGCCCg -3'
miRNA:   3'- uaGCCG-GcUCCG-GC-ACGCG-----------CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 39991 0.66 0.230234
Target:  5'- -gUGGCgccgaucuuCGAGGCCG-GCcUGCUGCCg -3'
miRNA:   3'- uaGCCG---------GCUCCGGCaCGcGCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 19083 0.68 0.152013
Target:  5'- cAUCGGCggCGAGGCCGUcgaauuGCGCgGCUaCCa -3'
miRNA:   3'- -UAGCCG--GCUCCGGCA------CGCG-CGAcGGg -5'
26467 5' -64.6 NC_005357.1 + 2573 0.69 0.140335
Target:  5'- -aCGGCCca-GCgCGUGCGCGCgcuugccGCCCu -3'
miRNA:   3'- uaGCCGGcucCG-GCACGCGCGa------CGGG- -5'
26467 5' -64.6 NC_005357.1 + 14996 0.67 0.202685
Target:  5'- --gGGCCuGcGGCCGccggGCGCGgUGCgCCa -3'
miRNA:   3'- uagCCGG-CuCCGGCa---CGCGCgACG-GG- -5'
26467 5' -64.6 NC_005357.1 + 12456 0.66 0.213344
Target:  5'- -aCGGCUGcauccAGGCCGUcGUGCGCcGCg- -3'
miRNA:   3'- uaGCCGGC-----UCCGGCA-CGCGCGaCGgg -5'
26467 5' -64.6 NC_005357.1 + 22068 0.68 0.168953
Target:  5'- cUCgGGUCGcGGUCG-GCGCGCgGCUCg -3'
miRNA:   3'- uAG-CCGGCuCCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 24584 0.68 0.164566
Target:  5'- -aCGGUCG-GGCCGUccgGCGUGUccuUGCCg -3'
miRNA:   3'- uaGCCGGCuCCGGCA---CGCGCG---ACGGg -5'
26467 5' -64.6 NC_005357.1 + 24719 0.66 0.218853
Target:  5'- aGUCGGUCG-GGCCGcuuccaccGCGC-CUGCgCg -3'
miRNA:   3'- -UAGCCGGCuCCGGCa-------CGCGcGACGgG- -5'
26467 5' -64.6 NC_005357.1 + 13165 0.66 0.213344
Target:  5'- uGUCGGCC-AGuGUCG-GcCGCGCUgggcGCCCu -3'
miRNA:   3'- -UAGCCGGcUC-CGGCaC-GCGCGA----CGGG- -5'
26467 5' -64.6 NC_005357.1 + 34438 0.66 0.213344
Target:  5'- -aCGuCCGAcGCCGUgGUGCuGCUGCCUg -3'
miRNA:   3'- uaGCcGGCUcCGGCA-CGCG-CGACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.