miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 3' -61.9 NC_005357.1 + 1763 0.7 0.170778
Target:  5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3'
miRNA:   3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 5126 0.7 0.157652
Target:  5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3'
miRNA:   3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5'
26468 3' -61.9 NC_005357.1 + 13317 0.72 0.117004
Target:  5'- cGCGCgUGACCGGcagcaAGUCcCGCAcGGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGCU-----UCGGuGCGU-CCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 33574 0.74 0.079357
Target:  5'- cGUGgCGACCGAGGCCaACGCGcuGGCCc -3'
miRNA:   3'- -CGCgGCUGGCUUCGG-UGCGUc-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 17681 0.67 0.258273
Target:  5'- --uCCGACagcauggguCGAGGCCGCGCAGGcGCg- -3'
miRNA:   3'- cgcGGCUG---------GCUUCGGUGCGUCC-CGga -5'
26468 3' -61.9 NC_005357.1 + 18705 0.69 0.205254
Target:  5'- cGCGCC-ACCGAGGCaCugGCccgcgaccuGGGCgCUa -3'
miRNA:   3'- -CGCGGcUGGCUUCG-GugCGu--------CCCG-GA- -5'
26468 3' -61.9 NC_005357.1 + 32551 0.71 0.153483
Target:  5'- cGCGCCuGGCCGAgaAGCagCGCGCcGGuGCCa -3'
miRNA:   3'- -CGCGG-CUGGCU--UCG--GUGCGuCC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 17988 0.75 0.073776
Target:  5'- aUGUCG-CCGAGGCCGCGCGcggcaccgacaaaucGGGCCg -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---------------CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 6549 0.69 0.205254
Target:  5'- gGCGuuGACguaGcAGcCCGCGUAGGGCUUg -3'
miRNA:   3'- -CGCggCUGg--CuUC-GGUGCGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 34316 0.76 0.058207
Target:  5'- aCGCCGGCCGc-GCgGUGCAGGGCCUc -3'
miRNA:   3'- cGCGGCUGGCuuCGgUGCGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 33777 0.7 0.15723
Target:  5'- aUGCCGACCGcgcgaugaAGGCCGgcgaccucgccacCGCAGcGGCCg -3'
miRNA:   3'- cGCGGCUGGC--------UUCGGU-------------GCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 30219 0.7 0.175366
Target:  5'- uGCGucCCGACCaGggGCaggcaGCGC-GGGCCg -3'
miRNA:   3'- -CGC--GGCUGG-CuuCGg----UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 7144 0.71 0.141571
Target:  5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3'
miRNA:   3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 21240 0.72 0.117004
Target:  5'- cGCGCaGACCagcagcAGGCCGCGCAGcaGGCCg -3'
miRNA:   3'- -CGCGgCUGGc-----UUCGGUGCGUC--CCGGa -5'
26468 3' -61.9 NC_005357.1 + 16824 0.73 0.107741
Target:  5'- cGCGCCG-CCGugguuGCCACuGCcuGGGCCg -3'
miRNA:   3'- -CGCGGCuGGCuu---CGGUG-CGu-CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 30135 0.73 0.093817
Target:  5'- aCGCCG-CCGuAGCCggcACGCuGGGCCa -3'
miRNA:   3'- cGCGGCuGGCuUCGG---UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 14725 0.67 0.27148
Target:  5'- gGCGgCGAgCCGcuGCCgGCGCGcGGCCUg -3'
miRNA:   3'- -CGCgGCU-GGCuuCGG-UGCGUcCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 28970 0.67 0.258273
Target:  5'- uGC-CCGAcaccgcgcCCGAGGCCGCcaaGCuggcGGGCCUg -3'
miRNA:   3'- -CGcGGCU--------GGCUUCGGUG---CGu---CCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 497 0.68 0.245596
Target:  5'- cGCGCUGAac-AAGuCCACGUuGGGCCa -3'
miRNA:   3'- -CGCGGCUggcUUC-GGUGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 18884 0.68 0.233439
Target:  5'- aUGUCGGCCGAGGCCAucgacCGCGuGcGCCg -3'
miRNA:   3'- cGCGGCUGGCUUCGGU-----GCGUcC-CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.