miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26470 3' -62.8 NC_005357.1 + 9760 0.66 0.286701
Target:  5'- uGCUC---GGGCUUCACGUCGG-GCAg -3'
miRNA:   3'- gCGAGcguCCCGGAGUGCGGUCgCGU- -5'
26470 3' -62.8 NC_005357.1 + 16425 0.66 0.279713
Target:  5'- gGC-CGCGGGGUaau-CGCCGGCgGCGu -3'
miRNA:   3'- gCGaGCGUCCCGgaguGCGGUCG-CGU- -5'
26470 3' -62.8 NC_005357.1 + 33968 0.66 0.279713
Target:  5'- gGCaUCGCAGGccaCCUCgACGCCGacaucGCGCc -3'
miRNA:   3'- gCG-AGCGUCCc--GGAG-UGCGGU-----CGCGu -5'
26470 3' -62.8 NC_005357.1 + 38917 0.66 0.272862
Target:  5'- uCGCUC-CGGGuuCUCGCGCU-GCGCu -3'
miRNA:   3'- -GCGAGcGUCCcgGAGUGCGGuCGCGu -5'
26470 3' -62.8 NC_005357.1 + 24996 0.66 0.265482
Target:  5'- uGCUgGCGGGGCCacugcUCaagggcgACGUgGGCGCc -3'
miRNA:   3'- gCGAgCGUCCCGG-----AG-------UGCGgUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 2830 0.66 0.259565
Target:  5'- uGCUCGC--GGCCaCGCGCagCGGCGCc -3'
miRNA:   3'- gCGAGCGucCCGGaGUGCG--GUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 26539 0.66 0.258914
Target:  5'- aGCU-GCuGGGCCUCACcuacguGCCcgagcaacagaucGGCGCGu -3'
miRNA:   3'- gCGAgCGuCCCGGAGUG------CGG-------------UCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 16057 0.66 0.253117
Target:  5'- aGUUCGCGcacGuGGCCgcCGCGCgCGGCGCc -3'
miRNA:   3'- gCGAGCGU---C-CCGGa-GUGCG-GUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 40031 0.66 0.253117
Target:  5'- aCGCUUGCcgcccugacaAGGGUacgCACGCgGGCGUc -3'
miRNA:   3'- -GCGAGCG----------UCCCGga-GUGCGgUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 7049 0.66 0.253117
Target:  5'- aGCaggCGCAuGGCCUCggGCGgCAGCGUc -3'
miRNA:   3'- gCGa--GCGUcCCGGAG--UGCgGUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 4813 0.67 0.246801
Target:  5'- aGCUUGUAGaGGUCg-GgGCCGGCGCc -3'
miRNA:   3'- gCGAGCGUC-CCGGagUgCGGUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 32545 0.67 0.246801
Target:  5'- uCGCcacgCGCcuGGCCgagaagcagCGCGCCGGUGCc -3'
miRNA:   3'- -GCGa---GCGucCCGGa--------GUGCGGUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 23191 0.67 0.246801
Target:  5'- aGUUCau-GGGCCUgACGCC-GCGCu -3'
miRNA:   3'- gCGAGcguCCCGGAgUGCGGuCGCGu -5'
26470 3' -62.8 NC_005357.1 + 34635 0.67 0.246801
Target:  5'- gCGCcUGCuGGGCggCgaaggguggACGCCGGCGCAg -3'
miRNA:   3'- -GCGaGCGuCCCGgaG---------UGCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 28648 0.67 0.246177
Target:  5'- cCGCgCGCAGuGCCagaUCGgugccggcggccuCGCCAGCGCGg -3'
miRNA:   3'- -GCGaGCGUCcCGG---AGU-------------GCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 14976 0.67 0.228636
Target:  5'- gCGCUgGCauaccagcgccAGGGCCUgCGgcCGCCgGGCGCGg -3'
miRNA:   3'- -GCGAgCG-----------UCCCGGA-GU--GCGG-UCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 6730 0.67 0.222837
Target:  5'- cCGCUgCGCuGGGCCgcCGCGCUcaauAGCGgAa -3'
miRNA:   3'- -GCGA-GCGuCCCGGa-GUGCGG----UCGCgU- -5'
26470 3' -62.8 NC_005357.1 + 31720 0.67 0.217163
Target:  5'- cCGCcgCGCGcGGGCUuuuUCACGCCuaaaaauauGCGCu -3'
miRNA:   3'- -GCGa-GCGU-CCCGG---AGUGCGGu--------CGCGu -5'
26470 3' -62.8 NC_005357.1 + 12549 0.67 0.217163
Target:  5'- gGCgUCGguGaauuucuugccGGCCUCGCGCU-GCGCGg -3'
miRNA:   3'- gCG-AGCguC-----------CCGGAGUGCGGuCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 18049 0.68 0.206186
Target:  5'- uGCUUG-GGGGCCUUA--CCGGCGCGg -3'
miRNA:   3'- gCGAGCgUCCCGGAGUgcGGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.