Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 9760 | 0.66 | 0.286701 |
Target: 5'- uGCUC---GGGCUUCACGUCGG-GCAg -3' miRNA: 3'- gCGAGcguCCCGGAGUGCGGUCgCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 16425 | 0.66 | 0.279713 |
Target: 5'- gGC-CGCGGGGUaau-CGCCGGCgGCGu -3' miRNA: 3'- gCGaGCGUCCCGgaguGCGGUCG-CGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 33968 | 0.66 | 0.279713 |
Target: 5'- gGCaUCGCAGGccaCCUCgACGCCGacaucGCGCc -3' miRNA: 3'- gCG-AGCGUCCc--GGAG-UGCGGU-----CGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 38917 | 0.66 | 0.272862 |
Target: 5'- uCGCUC-CGGGuuCUCGCGCU-GCGCu -3' miRNA: 3'- -GCGAGcGUCCcgGAGUGCGGuCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 24996 | 0.66 | 0.265482 |
Target: 5'- uGCUgGCGGGGCCacugcUCaagggcgACGUgGGCGCc -3' miRNA: 3'- gCGAgCGUCCCGG-----AG-------UGCGgUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 2830 | 0.66 | 0.259565 |
Target: 5'- uGCUCGC--GGCCaCGCGCagCGGCGCc -3' miRNA: 3'- gCGAGCGucCCGGaGUGCG--GUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 26539 | 0.66 | 0.258914 |
Target: 5'- aGCU-GCuGGGCCUCACcuacguGCCcgagcaacagaucGGCGCGu -3' miRNA: 3'- gCGAgCGuCCCGGAGUG------CGG-------------UCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 16057 | 0.66 | 0.253117 |
Target: 5'- aGUUCGCGcacGuGGCCgcCGCGCgCGGCGCc -3' miRNA: 3'- gCGAGCGU---C-CCGGa-GUGCG-GUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 40031 | 0.66 | 0.253117 |
Target: 5'- aCGCUUGCcgcccugacaAGGGUacgCACGCgGGCGUc -3' miRNA: 3'- -GCGAGCG----------UCCCGga-GUGCGgUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 7049 | 0.66 | 0.253117 |
Target: 5'- aGCaggCGCAuGGCCUCggGCGgCAGCGUc -3' miRNA: 3'- gCGa--GCGUcCCGGAG--UGCgGUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 4813 | 0.67 | 0.246801 |
Target: 5'- aGCUUGUAGaGGUCg-GgGCCGGCGCc -3' miRNA: 3'- gCGAGCGUC-CCGGagUgCGGUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 32545 | 0.67 | 0.246801 |
Target: 5'- uCGCcacgCGCcuGGCCgagaagcagCGCGCCGGUGCc -3' miRNA: 3'- -GCGa---GCGucCCGGa--------GUGCGGUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 23191 | 0.67 | 0.246801 |
Target: 5'- aGUUCau-GGGCCUgACGCC-GCGCu -3' miRNA: 3'- gCGAGcguCCCGGAgUGCGGuCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 34635 | 0.67 | 0.246801 |
Target: 5'- gCGCcUGCuGGGCggCgaaggguggACGCCGGCGCAg -3' miRNA: 3'- -GCGaGCGuCCCGgaG---------UGCGGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 28648 | 0.67 | 0.246177 |
Target: 5'- cCGCgCGCAGuGCCagaUCGgugccggcggccuCGCCAGCGCGg -3' miRNA: 3'- -GCGaGCGUCcCGG---AGU-------------GCGGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 14976 | 0.67 | 0.228636 |
Target: 5'- gCGCUgGCauaccagcgccAGGGCCUgCGgcCGCCgGGCGCGg -3' miRNA: 3'- -GCGAgCG-----------UCCCGGA-GU--GCGG-UCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 6730 | 0.67 | 0.222837 |
Target: 5'- cCGCUgCGCuGGGCCgcCGCGCUcaauAGCGgAa -3' miRNA: 3'- -GCGA-GCGuCCCGGa-GUGCGG----UCGCgU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 31720 | 0.67 | 0.217163 |
Target: 5'- cCGCcgCGCGcGGGCUuuuUCACGCCuaaaaauauGCGCu -3' miRNA: 3'- -GCGa-GCGU-CCCGG---AGUGCGGu--------CGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 12549 | 0.67 | 0.217163 |
Target: 5'- gGCgUCGguGaauuucuugccGGCCUCGCGCU-GCGCGg -3' miRNA: 3'- gCG-AGCguC-----------CCGGAGUGCGGuCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 18049 | 0.68 | 0.206186 |
Target: 5'- uGCUUG-GGGGCCUUA--CCGGCGCGg -3' miRNA: 3'- gCGAGCgUCCCGGAGUgcGGUCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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