miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 3' -65.6 NC_005357.1 + 33858 0.66 0.224942
Target:  5'- cACGCgCGGCCuacGaCGCCCaggaugaggucgAGCGCGGc -3'
miRNA:   3'- -UGCG-GCCGGuucCcGCGGG------------UCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 35240 0.66 0.224942
Target:  5'- cGCGCuguccCGGCUGcgucAGGGCG-UCAGCGCGu -3'
miRNA:   3'- -UGCG-----GCCGGU----UCCCGCgGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 40683 0.66 0.224942
Target:  5'- -gGCCGGCCAugacCGCCCGGUGUu- -3'
miRNA:   3'- ugCGGCCGGUucccGCGGGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 14132 0.66 0.224942
Target:  5'- uCGUCGGCCAGcGGCuuGCcuuccggccguuCCAGCGCGu -3'
miRNA:   3'- uGCGGCCGGUUcCCG--CG------------GGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 455 0.66 0.224942
Target:  5'- cUGCgCGGCCAGcuugcGGGCGCUgu-CGCGGu -3'
miRNA:   3'- uGCG-GCCGGUU-----CCCGCGGgucGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 37263 0.66 0.221589
Target:  5'- aACcCUcGCCAAGGGCGUgagcagcgacggccgCCuGCGCGGc -3'
miRNA:   3'- -UGcGGcCGGUUCCCGCG---------------GGuCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 14085 0.66 0.219377
Target:  5'- cGCGCUgcccgacgaGGCCAAGGccaucgaguccGaCGCCgAGCGCGc -3'
miRNA:   3'- -UGCGG---------CCGGUUCC-----------C-GCGGgUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 17697 0.66 0.219377
Target:  5'- aGCGCCacucgGGCCGGGaaaUGCCCAuCGCGGc -3'
miRNA:   3'- -UGCGG-----CCGGUUCcc-GCGGGUcGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 5931 0.66 0.217731
Target:  5'- cCGCUGGCggCAucccagacguacacGGGGCcauuGUCCAGCGCGu -3'
miRNA:   3'- uGCGGCCG--GU--------------UCCCG----CGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 613 0.66 0.21393
Target:  5'- -gGUCGGCCAgcAGcgccguggacacGGCGUCCGGCGuCGa -3'
miRNA:   3'- ugCGGCCGGU--UC------------CCGCGGGUCGC-GCc -5'
26476 3' -65.6 NC_005357.1 + 34253 0.66 0.21393
Target:  5'- uCGCCGGCagcauccGGGCGCac-GCGCaGGg -3'
miRNA:   3'- uGCGGCCGguu----CCCGCGgguCGCG-CC- -5'
26476 3' -65.6 NC_005357.1 + 21748 0.66 0.212319
Target:  5'- gGCG-CGGCCGcguccacauaggacAGGcCGCCCGGCaCGGu -3'
miRNA:   3'- -UGCgGCCGGU--------------UCCcGCGGGUCGcGCC- -5'
26476 3' -65.6 NC_005357.1 + 27771 0.66 0.210718
Target:  5'- cCGCacccaGGCCAAGGuGCaagguaucaaucugcGCaCCGGCGcCGGa -3'
miRNA:   3'- uGCGg----CCGGUUCC-CG---------------CG-GGUCGC-GCC- -5'
26476 3' -65.6 NC_005357.1 + 6741 0.66 0.208599
Target:  5'- gGCGUCGGCCuu-GGCGCCCcacuuuuccuuGGCGa-- -3'
miRNA:   3'- -UGCGGCCGGuucCCGCGGG-----------UCGCgcc -5'
26476 3' -65.6 NC_005357.1 + 611 0.66 0.208599
Target:  5'- cAUGUCGGCgAugauGGCcucaGCCuCGGCGCGGg -3'
miRNA:   3'- -UGCGGCCGgUuc--CCG----CGG-GUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 28636 0.66 0.208599
Target:  5'- -gGCCGGCCAguuccgcgcgcAGugccagaucGGUGCcggcggccucgCCAGCGCGGc -3'
miRNA:   3'- ugCGGCCGGU-----------UC---------CCGCG-----------GGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 14920 0.66 0.208073
Target:  5'- cGCGCCgagaagcuggcGGCCGAGGcCGCCgGcauccucGCGUGGu -3'
miRNA:   3'- -UGCGG-----------CCGGUUCCcGCGGgU-------CGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 27502 0.66 0.208073
Target:  5'- cCGgCGGCCucGGcCGCCagcuucuCGGCGCGGu -3'
miRNA:   3'- uGCgGCCGGuuCCcGCGG-------GUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 24140 0.66 0.203384
Target:  5'- -aGCCGGCUgcGcGCcugGCCCAGCGCc- -3'
miRNA:   3'- ugCGGCCGGuuCcCG---CGGGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 34634 0.66 0.203384
Target:  5'- aGCGCCugcugggcGGCgAAGGGUGgacgCCGGCGCa- -3'
miRNA:   3'- -UGCGG--------CCGgUUCCCGCg---GGUCGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.