miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 3' -65.6 NC_005357.1 + 2850 0.69 0.128338
Target:  5'- gGCGCCagcaccagcgaggGGCCugguucgaccaguucGAGGaUGUCCAGCGCGGu -3'
miRNA:   3'- -UGCGG-------------CCGG---------------UUCCcGCGGGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 32551 0.7 0.111402
Target:  5'- cGCGCCuGGCCGAGaagcaGCGCgCCGGUGCc- -3'
miRNA:   3'- -UGCGG-CCGGUUCc----CGCG-GGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 21710 0.71 0.082723
Target:  5'- cAUGUCGGCCugauGGGGUGCCC-GUGCc- -3'
miRNA:   3'- -UGCGGCCGGu---UCCCGCGGGuCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 10399 0.75 0.04386
Target:  5'- cGCGCCGGguUCAAugucguGGGCGUCCAGCGUGu -3'
miRNA:   3'- -UGCGGCC--GGUU------CCCGCGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 18330 0.67 0.169964
Target:  5'- cGCGCauGUagcGGGGUGCCCGugccccGCGCGGu -3'
miRNA:   3'- -UGCGgcCGgu-UCCCGCGGGU------CGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 30922 0.68 0.145318
Target:  5'- cACGCCaGCgCAGGcGCGCCCuuUGCGGu -3'
miRNA:   3'- -UGCGGcCG-GUUCcCGCGGGucGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 16371 0.7 0.10003
Target:  5'- uCGCCGaGCgCAuGGagcGCGCCCGccGCGCGGg -3'
miRNA:   3'- uGCGGC-CG-GUuCC---CGCGGGU--CGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 9248 0.77 0.030498
Target:  5'- -gGCCGuGCCGAGGGCGCCCAcuucCGCa- -3'
miRNA:   3'- ugCGGC-CGGUUCCCGCGGGUc---GCGcc -5'
26476 3' -65.6 NC_005357.1 + 33423 0.69 0.134257
Target:  5'- uGCGCC-GCCugcuGGaaGCGCCCccGCGCGGc -3'
miRNA:   3'- -UGCGGcCGGuu--CC--CGCGGGu-CGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 1887 0.77 0.029655
Target:  5'- gGCGCUGGCCGgguGGGCGaaCAGCaGCGGg -3'
miRNA:   3'- -UGCGGCCGGUu--CCCGCggGUCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 40729 0.7 0.101663
Target:  5'- cACGCCGGCCcacGGCGaauuucucgacuaCCuGCGCGGc -3'
miRNA:   3'- -UGCGGCCGGuucCCGCg------------GGuCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 18753 0.69 0.130746
Target:  5'- gUGuCCGGCCcgaccGAGGGuCGCCUGGUGCa- -3'
miRNA:   3'- uGC-GGCCGG-----UUCCC-GCGGGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 13052 0.71 0.094763
Target:  5'- cGCGCCGaGuCCGAGGGCuggggcaagGCcaCCGGCGCGu -3'
miRNA:   3'- -UGCGGC-C-GGUUCCCG---------CG--GGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 41114 0.71 0.08976
Target:  5'- uUGUCGGCCuGGuGGCcgucGCCCugGGCGCGGc -3'
miRNA:   3'- uGCGGCCGGuUC-CCG----CGGG--UCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 5101 0.73 0.061172
Target:  5'- -gGCCGGCCca--GCGUCCGGUGCGGc -3'
miRNA:   3'- ugCGGCCGGuuccCGCGGGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 12808 0.74 0.0504
Target:  5'- aGC-CCGGCCAcaaGCGCCCGGCGCuGGa -3'
miRNA:   3'- -UGcGGCCGGUuccCGCGGGUCGCG-CC- -5'
26476 3' -65.6 NC_005357.1 + 26975 0.67 0.182231
Target:  5'- aGCuUCGGCCAAGGGCGCgUcaagaacaucaacaAGCuGUGGu -3'
miRNA:   3'- -UGcGGCCGGUUCCCGCGgG--------------UCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 37736 0.67 0.169964
Target:  5'- uUGCCGGCCAuucucgccGCGCuauCCGGCGCGc -3'
miRNA:   3'- uGCGGCCGGUucc-----CGCG---GGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 4094 0.68 0.157205
Target:  5'- -gGCCGGCCAGGugggcGGCGCUgAauucGuCGCGGu -3'
miRNA:   3'- ugCGGCCGGUUC-----CCGCGGgU----C-GCGCC- -5'
26476 3' -65.6 NC_005357.1 + 36262 0.68 0.149186
Target:  5'- -gGCCcGCUAAGGGUGCCC-GUGCc- -3'
miRNA:   3'- ugCGGcCGGUUCCCGCGGGuCGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.