miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 14228 0.65 0.432436
Target:  5'- uGGCCgaccuggacaagGCGCCGCacCUGCuggGCGUgGGCa -3'
miRNA:   3'- -UCGGa-----------UGCGGCG--GAUGu--UGCGgCCGg -5'
26477 3' -59.7 NC_005357.1 + 28011 0.66 0.424857
Target:  5'- uGCCgcagGCG-CGCCUgGCGACGCCcaGCUu -3'
miRNA:   3'- uCGGa---UGCgGCGGA-UGUUGCGGc-CGG- -5'
26477 3' -59.7 NC_005357.1 + 41412 0.66 0.424857
Target:  5'- uGGCCUuccagguguucgACGCUGCggugaaccACGGCaCCGGCCa -3'
miRNA:   3'- -UCGGA------------UGCGGCGga------UGUUGcGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37427 0.66 0.424857
Target:  5'- aAGCggaCUGCGCCGaCCUGCuguuCGCCaacGUCa -3'
miRNA:   3'- -UCG---GAUGCGGC-GGAUGuu--GCGGc--CGG- -5'
26477 3' -59.7 NC_005357.1 + 4867 0.66 0.424857
Target:  5'- cGGUCagguCGuuGCCcagcgcgGCGACGgCGGCCu -3'
miRNA:   3'- -UCGGau--GCggCGGa------UGUUGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37343 0.66 0.424857
Target:  5'- gGGCCg--GCCGCCUGuucCAAcCGCaaaaccugccgCGGCCu -3'
miRNA:   3'- -UCGGaugCGGCGGAU---GUU-GCG-----------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 13134 0.66 0.423915
Target:  5'- aGGCgUGgGUcguucugcaacugCGCCU-CGAUGUCGGCCa -3'
miRNA:   3'- -UCGgAUgCG-------------GCGGAuGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 23773 0.66 0.419226
Target:  5'- gGGCCgaUGCGCCGCggCUACGAagauggauuccguggUGCCgaucaacuGGCCu -3'
miRNA:   3'- -UCGG--AUGCGGCG--GAUGUU---------------GCGG--------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 23868 0.66 0.415496
Target:  5'- cGCgaGCGCgGCCUccacCGACGUgaucgacuuCGGCCa -3'
miRNA:   3'- uCGgaUGCGgCGGAu---GUUGCG---------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 620 0.66 0.415496
Target:  5'- cAGCa-GCGCCGUggACAcgGCGuCCGGCg -3'
miRNA:   3'- -UCGgaUGCGGCGgaUGU--UGC-GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 8419 0.66 0.415496
Target:  5'- gGGCCgUGCGCuUGUCUACGGCcuugagGCUuuGGCCc -3'
miRNA:   3'- -UCGG-AUGCG-GCGGAUGUUG------CGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 27506 0.66 0.415496
Target:  5'- cGGCCUcgGCCGCCagcuucuCGGCG-CGGUCg -3'
miRNA:   3'- -UCGGAugCGGCGGau-----GUUGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 22236 0.66 0.41364
Target:  5'- cGGCCcugguugucgGCCGCgaugGCGuauuCGCCGGCCg -3'
miRNA:   3'- -UCGGaug-------CGGCGga--UGUu---GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 3266 0.66 0.409941
Target:  5'- cAGCUUccGCGCCagauagucggcccguGCCUuuGCGAUGCCGGa- -3'
miRNA:   3'- -UCGGA--UGCGG---------------CGGA--UGUUGCGGCCgg -5'
26477 3' -59.7 NC_005357.1 + 12921 0.66 0.406263
Target:  5'- cAGCCUGuCGUCGCCauugACGuggacacgaccgACGCggaacUGGCCg -3'
miRNA:   3'- -UCGGAU-GCGGCGGa---UGU------------UGCG-----GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18276 0.66 0.406263
Target:  5'- cAGCCgucgagGCGCUggGCCagGCGcgcaGCCGGCUg -3'
miRNA:   3'- -UCGGa-----UGCGG--CGGa-UGUug--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 42078 0.66 0.406263
Target:  5'- gGGCCUgGCGgaCgGCCUgcugcGCGACGCCaccGCCa -3'
miRNA:   3'- -UCGGA-UGC--GgCGGA-----UGUUGCGGc--CGG- -5'
26477 3' -59.7 NC_005357.1 + 14819 0.66 0.406263
Target:  5'- cGGCg-GCGCUGCCUucgcccagguCGAUGCCguuggcGGCCa -3'
miRNA:   3'- -UCGgaUGCGGCGGAu---------GUUGCGG------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 27020 0.66 0.406263
Target:  5'- cGCgUGCaucgGUCGUCcgGCAucuuCGCCGGCCc -3'
miRNA:   3'- uCGgAUG----CGGCGGa-UGUu---GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32454 0.66 0.406263
Target:  5'- -cCCUACGCCcCCUACugccgagguGGgGgCGGCCg -3'
miRNA:   3'- ucGGAUGCGGcGGAUG---------UUgCgGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.