Results 1 - 20 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 14228 | 0.65 | 0.432436 |
Target: 5'- uGGCCgaccuggacaagGCGCCGCacCUGCuggGCGUgGGCa -3' miRNA: 3'- -UCGGa-----------UGCGGCG--GAUGu--UGCGgCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 28011 | 0.66 | 0.424857 |
Target: 5'- uGCCgcagGCG-CGCCUgGCGACGCCcaGCUu -3' miRNA: 3'- uCGGa---UGCgGCGGA-UGUUGCGGc-CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 41412 | 0.66 | 0.424857 |
Target: 5'- uGGCCUuccagguguucgACGCUGCggugaaccACGGCaCCGGCCa -3' miRNA: 3'- -UCGGA------------UGCGGCGga------UGUUGcGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 37427 | 0.66 | 0.424857 |
Target: 5'- aAGCggaCUGCGCCGaCCUGCuguuCGCCaacGUCa -3' miRNA: 3'- -UCG---GAUGCGGC-GGAUGuu--GCGGc--CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 4867 | 0.66 | 0.424857 |
Target: 5'- cGGUCagguCGuuGCCcagcgcgGCGACGgCGGCCu -3' miRNA: 3'- -UCGGau--GCggCGGa------UGUUGCgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 37343 | 0.66 | 0.424857 |
Target: 5'- gGGCCg--GCCGCCUGuucCAAcCGCaaaaccugccgCGGCCu -3' miRNA: 3'- -UCGGaugCGGCGGAU---GUU-GCG-----------GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 13134 | 0.66 | 0.423915 |
Target: 5'- aGGCgUGgGUcguucugcaacugCGCCU-CGAUGUCGGCCa -3' miRNA: 3'- -UCGgAUgCG-------------GCGGAuGUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23773 | 0.66 | 0.419226 |
Target: 5'- gGGCCgaUGCGCCGCggCUACGAagauggauuccguggUGCCgaucaacuGGCCu -3' miRNA: 3'- -UCGG--AUGCGGCG--GAUGUU---------------GCGG--------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23868 | 0.66 | 0.415496 |
Target: 5'- cGCgaGCGCgGCCUccacCGACGUgaucgacuuCGGCCa -3' miRNA: 3'- uCGgaUGCGgCGGAu---GUUGCG---------GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 620 | 0.66 | 0.415496 |
Target: 5'- cAGCa-GCGCCGUggACAcgGCGuCCGGCg -3' miRNA: 3'- -UCGgaUGCGGCGgaUGU--UGC-GGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 8419 | 0.66 | 0.415496 |
Target: 5'- gGGCCgUGCGCuUGUCUACGGCcuugagGCUuuGGCCc -3' miRNA: 3'- -UCGG-AUGCG-GCGGAUGUUG------CGG--CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 27506 | 0.66 | 0.415496 |
Target: 5'- cGGCCUcgGCCGCCagcuucuCGGCG-CGGUCg -3' miRNA: 3'- -UCGGAugCGGCGGau-----GUUGCgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 22236 | 0.66 | 0.41364 |
Target: 5'- cGGCCcugguugucgGCCGCgaugGCGuauuCGCCGGCCg -3' miRNA: 3'- -UCGGaug-------CGGCGga--UGUu---GCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 3266 | 0.66 | 0.409941 |
Target: 5'- cAGCUUccGCGCCagauagucggcccguGCCUuuGCGAUGCCGGa- -3' miRNA: 3'- -UCGGA--UGCGG---------------CGGA--UGUUGCGGCCgg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 12921 | 0.66 | 0.406263 |
Target: 5'- cAGCCUGuCGUCGCCauugACGuggacacgaccgACGCggaacUGGCCg -3' miRNA: 3'- -UCGGAU-GCGGCGGa---UGU------------UGCG-----GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 18276 | 0.66 | 0.406263 |
Target: 5'- cAGCCgucgagGCGCUggGCCagGCGcgcaGCCGGCUg -3' miRNA: 3'- -UCGGa-----UGCGG--CGGa-UGUug--CGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 42078 | 0.66 | 0.406263 |
Target: 5'- gGGCCUgGCGgaCgGCCUgcugcGCGACGCCaccGCCa -3' miRNA: 3'- -UCGGA-UGC--GgCGGA-----UGUUGCGGc--CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 14819 | 0.66 | 0.406263 |
Target: 5'- cGGCg-GCGCUGCCUucgcccagguCGAUGCCguuggcGGCCa -3' miRNA: 3'- -UCGgaUGCGGCGGAu---------GUUGCGG------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 27020 | 0.66 | 0.406263 |
Target: 5'- cGCgUGCaucgGUCGUCcgGCAucuuCGCCGGCCc -3' miRNA: 3'- uCGgAUG----CGGCGGa-UGUu---GCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32454 | 0.66 | 0.406263 |
Target: 5'- -cCCUACGCCcCCUACugccgagguGGgGgCGGCCg -3' miRNA: 3'- ucGGAUGCGGcGGAUG---------UUgCgGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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