miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 38623 0.66 0.39716
Target:  5'- cGCCUGC-CCaaCUACAacgaauuccagGCGCUGGCUu -3'
miRNA:   3'- uCGGAUGcGGcgGAUGU-----------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 38556 0.75 0.108711
Target:  5'- cGGCa-GCGCgGCCUACAGCGaCGGCg -3'
miRNA:   3'- -UCGgaUGCGgCGGAUGUUGCgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 38387 0.7 0.237917
Target:  5'- uGGCCUGcCGCuCGCC-GCG--GCCGGCUu -3'
miRNA:   3'- -UCGGAU-GCG-GCGGaUGUugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 38334 0.69 0.284163
Target:  5'- -uUCaGCGCCGCCcACcugGCCGGCCu -3'
miRNA:   3'- ucGGaUGCGGCGGaUGuugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 38057 0.72 0.17339
Target:  5'- cGCCUggcuGCGCaucCGCCUGC--CGuCCGGCCg -3'
miRNA:   3'- uCGGA----UGCG---GCGGAUGuuGC-GGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 38056 0.71 0.192955
Target:  5'- aAGUCggcCGUCGCCUucacgcgcaccgGCAACGCaaCGGCCa -3'
miRNA:   3'- -UCGGau-GCGGCGGA------------UGUUGCG--GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37910 0.66 0.39716
Target:  5'- uGGUCUGCGaugcgccaagCGCCUGUGGCGCCGcGCg -3'
miRNA:   3'- -UCGGAUGCg---------GCGGAUGUUGCGGC-CGg -5'
26477 3' -59.7 NC_005357.1 + 37854 0.68 0.313641
Target:  5'- cGCCUgGCGCaccgagcagCGCCUcgGCGACuUCGGCCu -3'
miRNA:   3'- uCGGA-UGCG---------GCGGA--UGUUGcGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37798 0.68 0.313641
Target:  5'- uGCCgACcCUGCg-GCAGCGCgGGCCa -3'
miRNA:   3'- uCGGaUGcGGCGgaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37740 0.67 0.379353
Target:  5'- cGGCCauucuCGCCGCgCUAUccggcGCGCUGGUg -3'
miRNA:   3'- -UCGGau---GCGGCG-GAUGu----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 37640 0.71 0.182941
Target:  5'- uGGCCUACGCCaaaGCCUucGCggUGUC-GCCu -3'
miRNA:   3'- -UCGGAUGCGG---CGGA--UGuuGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 37605 0.68 0.313641
Target:  5'- --aCUACGgCGaCCUGu--CGCCGGCCa -3'
miRNA:   3'- ucgGAUGCgGC-GGAUguuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37585 0.75 0.109933
Target:  5'- aAGCUg--GCCGCUUuccgugaauucgacgACGGCGCCGGCCc -3'
miRNA:   3'- -UCGGaugCGGCGGA---------------UGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37539 0.69 0.284163
Target:  5'- uGGCCgaaaacgAgGCCGCCgucGCcGCGCUGGgCa -3'
miRNA:   3'- -UCGGa------UgCGGCGGa--UGuUGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 37427 0.66 0.424857
Target:  5'- aAGCggaCUGCGCCGaCCUGCuguuCGCCaacGUCa -3'
miRNA:   3'- -UCG---GAUGCGGC-GGAUGuu--GCGGc--CGG- -5'
26477 3' -59.7 NC_005357.1 + 37343 0.66 0.424857
Target:  5'- gGGCCg--GCCGCCUGuucCAAcCGCaaaaccugccgCGGCCu -3'
miRNA:   3'- -UCGGaugCGGCGGAU---GUU-GCG-----------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37294 0.73 0.147359
Target:  5'- cGCCUGCGCgGCacguUGCAguucaacgGCGCCaGCCg -3'
miRNA:   3'- uCGGAUGCGgCGg---AUGU--------UGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 37149 0.72 0.178109
Target:  5'- uGGCCgacaACGCCGCgaACAucaacACGgUGGCCg -3'
miRNA:   3'- -UCGGa---UGCGGCGgaUGU-----UGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 36999 0.67 0.379353
Target:  5'- cGCCcACGCCGCCauccGCGCCGuggaGCg -3'
miRNA:   3'- uCGGaUGCGGCGGauguUGCGGC----CGg -5'
26477 3' -59.7 NC_005357.1 + 36916 0.67 0.379353
Target:  5'- cGGCCgGCG-UGCCUACGACuuUGGCa -3'
miRNA:   3'- -UCGGaUGCgGCGGAUGUUGcgGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.