miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26482 3' -54.8 NC_005357.1 + 9312 0.66 0.701442
Target:  5'- -aCGGCGACauucagggccuugggUUCAugGgCGAggauguaggccgccGCGUCGCu -3'
miRNA:   3'- ugGCCGCUG---------------AAGUugC-GCU--------------CGUAGCG- -5'
26482 3' -54.8 NC_005357.1 + 10117 0.66 0.700342
Target:  5'- cGCCGGCcuuGAUggCGGCGaUGAG-GUCGCg -3'
miRNA:   3'- -UGGCCG---CUGaaGUUGC-GCUCgUAGCG- -5'
26482 3' -54.8 NC_005357.1 + 5647 0.66 0.700342
Target:  5'- uGCUGGUGGCUg-GACGCGGuuuGCAgaacaGCa -3'
miRNA:   3'- -UGGCCGCUGAagUUGCGCU---CGUag---CG- -5'
26482 3' -54.8 NC_005357.1 + 8527 0.66 0.700342
Target:  5'- cGCCGGCGaACUU--GCcCaGGUAUCGCa -3'
miRNA:   3'- -UGGCCGC-UGAAguUGcGcUCGUAGCG- -5'
26482 3' -54.8 NC_005357.1 + 31002 0.66 0.700342
Target:  5'- uAUCGGCGACcugC-ACGCcGGC-UCGCc -3'
miRNA:   3'- -UGGCCGCUGaa-GuUGCGcUCGuAGCG- -5'
26482 3' -54.8 NC_005357.1 + 7785 0.66 0.700342
Target:  5'- cGCCGGCGuccaccCUUCGcCGCccAGCAggCGCu -3'
miRNA:   3'- -UGGCCGCu-----GAAGUuGCGc-UCGUa-GCG- -5'
26482 3' -54.8 NC_005357.1 + 29465 0.66 0.699242
Target:  5'- cACCaGGCGACga-AGCGCGcGGCcaguuccgcgucgGUCGUg -3'
miRNA:   3'- -UGG-CCGCUGaagUUGCGC-UCG-------------UAGCG- -5'
26482 3' -54.8 NC_005357.1 + 16621 0.66 0.69373
Target:  5'- cCCGGUGcAgaUCAAcgauaccgagcgcgcCGCGcGCAUCGCg -3'
miRNA:   3'- uGGCCGC-UgaAGUU---------------GCGCuCGUAGCG- -5'
26482 3' -54.8 NC_005357.1 + 22819 0.66 0.69373
Target:  5'- gACUGGCccGACUUCGcCGCGcugccgacagccgacAGCG-CGCg -3'
miRNA:   3'- -UGGCCG--CUGAAGUuGCGC---------------UCGUaGCG- -5'
26482 3' -54.8 NC_005357.1 + 23504 0.66 0.689308
Target:  5'- gACCuGCGGCagUucCGCGAGCG-CGCc -3'
miRNA:   3'- -UGGcCGCUGaaGuuGCGCUCGUaGCG- -5'
26482 3' -54.8 NC_005357.1 + 7365 0.66 0.689308
Target:  5'- cUCGGCGuCguucgucCAGCgGCGGGCAcCGCg -3'
miRNA:   3'- uGGCCGCuGaa-----GUUG-CGCUCGUaGCG- -5'
26482 3' -54.8 NC_005357.1 + 25787 0.66 0.689308
Target:  5'- gGCC-GCGAUgcgcgCGGCGCGcucGGUAUCGUu -3'
miRNA:   3'- -UGGcCGCUGaa---GUUGCGC---UCGUAGCG- -5'
26482 3' -54.8 NC_005357.1 + 17292 0.66 0.689308
Target:  5'- aGCCGGCGc------CGCGGGCG-CGCa -3'
miRNA:   3'- -UGGCCGCugaaguuGCGCUCGUaGCG- -5'
26482 3' -54.8 NC_005357.1 + 32851 0.66 0.689308
Target:  5'- cGCCuGGCcgcaGACggUCGGCGCcGAGauuGUCGCg -3'
miRNA:   3'- -UGG-CCG----CUGa-AGUUGCG-CUCg--UAGCG- -5'
26482 3' -54.8 NC_005357.1 + 20669 0.66 0.688202
Target:  5'- uGCCgGGCGGCcugUCcuaugugGACGCG-GCcgCGCc -3'
miRNA:   3'- -UGG-CCGCUGa--AG-------UUGCGCuCGuaGCG- -5'
26482 3' -54.8 NC_005357.1 + 31539 0.66 0.678218
Target:  5'- uCCGGUGGaggaauaCGcCGCGcGCAUCGCg -3'
miRNA:   3'- uGGCCGCUgaa----GUuGCGCuCGUAGCG- -5'
26482 3' -54.8 NC_005357.1 + 19008 0.66 0.678218
Target:  5'- gGCCGGCGucgcACUgacCGGCGCGcuCAUCa- -3'
miRNA:   3'- -UGGCCGC----UGAa--GUUGCGCucGUAGcg -5'
26482 3' -54.8 NC_005357.1 + 24576 0.66 0.667082
Target:  5'- uACCugGGCGACgaggCcacgGugGCGGGCAUCa- -3'
miRNA:   3'- -UGG--CCGCUGaa--G----UugCGCUCGUAGcg -5'
26482 3' -54.8 NC_005357.1 + 15285 0.66 0.667082
Target:  5'- gUgGGgGACUUCGagugauGCGCGcGGCGUCaGCu -3'
miRNA:   3'- uGgCCgCUGAAGU------UGCGC-UCGUAG-CG- -5'
26482 3' -54.8 NC_005357.1 + 4018 0.66 0.667082
Target:  5'- cGCCGGCcACcagcgUCAugccGCGCGGGUcgagCGCa -3'
miRNA:   3'- -UGGCCGcUGa----AGU----UGCGCUCGua--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.