miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 18797 0.66 0.790937
Target:  5'- ---cGCCGGCuaccGCgaaACCAACcgcacguuuuaccggGGGCUGCa -3'
miRNA:   3'- gaaaCGGCCG----UGa--UGGUUG---------------UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27985 0.66 0.786831
Target:  5'- gCUggGCCaucaGGCugUaGCCGAUGAGgCGCu -3'
miRNA:   3'- -GAaaCGG----CCGugA-UGGUUGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 4667 0.66 0.786831
Target:  5'- -gUUGuuGGCggGC-ACCAGCGcGCCGg -3'
miRNA:   3'- gaAACggCCG--UGaUGGUUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 13130 0.66 0.786831
Target:  5'- --gUGCUgGGCAaggGCCAGCAGuucGUCGCc -3'
miRNA:   3'- gaaACGG-CCGUga-UGGUUGUU---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 13040 0.66 0.786831
Target:  5'- --cUGCUGGC-CUACCGcgcCGAGuCCGa -3'
miRNA:   3'- gaaACGGCCGuGAUGGUu--GUUC-GGCg -5'
26488 5' -52.6 NC_005357.1 + 21154 0.66 0.786831
Target:  5'- gCUggGCCGaCACUuacGCCGACAuGCUGg -3'
miRNA:   3'- -GAaaCGGCcGUGA---UGGUUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 33764 0.66 0.786831
Target:  5'- ---cGCgCGGCACgcaaUGCCGACcgcgcgaugaAGGCCGg -3'
miRNA:   3'- gaaaCG-GCCGUG----AUGGUUG----------UUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 33741 0.66 0.776444
Target:  5'- --cUGCgCGGCGCacaccugggcgGCgCAGC-AGCCGCu -3'
miRNA:   3'- gaaACG-GCCGUGa----------UG-GUUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23183 0.66 0.776444
Target:  5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3'
miRNA:   3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 23966 0.66 0.776444
Target:  5'- ---gGCCGaCGCcGCCGGC--GCCGCg -3'
miRNA:   3'- gaaaCGGCcGUGaUGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 14675 0.66 0.776444
Target:  5'- ---aGCCGG-ACgagGgCAGCGAGuuGCg -3'
miRNA:   3'- gaaaCGGCCgUGa--UgGUUGUUCggCG- -5'
26488 5' -52.6 NC_005357.1 + 9520 0.66 0.776444
Target:  5'- ---aGCCGuGCAg-GCCGu--GGCCGCa -3'
miRNA:   3'- gaaaCGGC-CGUgaUGGUuguUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 20109 0.66 0.776444
Target:  5'- ---cGCguuCGGCACgGCCAGCAGcaucguGCUGCc -3'
miRNA:   3'- gaaaCG---GCCGUGaUGGUUGUU------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 34780 0.66 0.775396
Target:  5'- --gUGUaCGGCAaggaGCCGGCGugggucgAGCCGCg -3'
miRNA:   3'- gaaACG-GCCGUga--UGGUUGU-------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 17278 0.66 0.765894
Target:  5'- -aUUGCCGucCACgaaGCCGGC--GCCGCg -3'
miRNA:   3'- gaAACGGCc-GUGa--UGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37796 0.66 0.765894
Target:  5'- -cUUGCCGacccugcggcaGCGCggGCCAACAuuGGCCugGCu -3'
miRNA:   3'- gaAACGGC-----------CGUGa-UGGUUGU--UCGG--CG- -5'
26488 5' -52.6 NC_005357.1 + 776 0.66 0.765894
Target:  5'- -cUUGCCGGUcagaucgggccGCUGCgcaaucgccguCAGCAGGUgGCu -3'
miRNA:   3'- gaAACGGCCG-----------UGAUG-----------GUUGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 13777 0.66 0.765894
Target:  5'- ---cGCCGGCACcgauCUGGCAcuGCgCGCg -3'
miRNA:   3'- gaaaCGGCCGUGau--GGUUGUu-CG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 4695 0.66 0.765894
Target:  5'- ---aGCgCGGCGagaaugGCCGGCAAGuuGUu -3'
miRNA:   3'- gaaaCG-GCCGUga----UGGUUGUUCggCG- -5'
26488 5' -52.6 NC_005357.1 + 9319 0.66 0.765894
Target:  5'- --cUGgCGGCGCacgucgGCgCGGCGGGCgGCg -3'
miRNA:   3'- gaaACgGCCGUGa-----UG-GUUGUUCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.