miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26489 3' -56.2 NC_005357.1 + 14996 0.66 0.605759
Target:  5'- gGGCcug--CGGCCgccgggcgcGGugCGCCaGGCGCg -3'
miRNA:   3'- -CCGauauaGCCGG---------UCugGUGG-CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 12712 0.66 0.605759
Target:  5'- uGGCUGUucaaGUCGcCCGGcCCGuuGGUGCu -3'
miRNA:   3'- -CCGAUA----UAGCcGGUCuGGUggCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 22236 0.66 0.605759
Target:  5'- cGGCccugguUGUCGGCCGcGAuggcguauUCGCCGGC-Cg -3'
miRNA:   3'- -CCGau----AUAGCCGGU-CU--------GGUGGCCGuG- -5'
26489 3' -56.2 NC_005357.1 + 5289 0.66 0.604644
Target:  5'- cGGCguUGUCGGCCAcggcgucGAuauuuuccaggUCGCCGGcCACg -3'
miRNA:   3'- -CCGauAUAGCCGGU-------CU-----------GGUGGCC-GUG- -5'
26489 3' -56.2 NC_005357.1 + 18285 0.66 0.594618
Target:  5'- aGGCgc--UgGGCCAGGCgcgcaGCCGGCu- -3'
miRNA:   3'- -CCGauauAgCCGGUCUGg----UGGCCGug -5'
26489 3' -56.2 NC_005357.1 + 14849 0.66 0.594618
Target:  5'- cGUUGg--CGGCCAGcGCCGCacgcugGGCGCc -3'
miRNA:   3'- cCGAUauaGCCGGUC-UGGUGg-----CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 12784 0.66 0.594618
Target:  5'- uGCUugaaGUCGGCCucAGACagGCUGGUGCg -3'
miRNA:   3'- cCGAua--UAGCCGG--UCUGg-UGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 27503 0.66 0.594618
Target:  5'- cGGCggccUCGGCC--GCCAgcuucUCGGCGCg -3'
miRNA:   3'- -CCGauauAGCCGGucUGGU-----GGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 41233 0.66 0.594618
Target:  5'- cGGUUAUuccaacaaccCGGCC-GACC-CCGGCGg -3'
miRNA:   3'- -CCGAUAua--------GCCGGuCUGGuGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 11997 0.66 0.593505
Target:  5'- uGGCcuuuuccacGUCGGCCAGcagcgcgGCCgugGCCGGCGa -3'
miRNA:   3'- -CCGaua------UAGCCGGUC-------UGG---UGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 37996 0.66 0.587947
Target:  5'- uGGCgGUGUugCGGCCGGguacgaccuacgacuGCCGcacgcucaaggcCCGGCGCg -3'
miRNA:   3'- -CCGaUAUA--GCCGGUC---------------UGGU------------GGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 25801 0.66 0.576863
Target:  5'- cGGCgcgcUCGGuaucguugaucugcaCCGGGCCGCCguuGGCGCc -3'
miRNA:   3'- -CCGauauAGCC---------------GGUCUGGUGG---CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 10059 0.66 0.572441
Target:  5'- uGCUGgg-CGGCCgGGGCC-UCGGCGg -3'
miRNA:   3'- cCGAUauaGCCGG-UCUGGuGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 20225 0.66 0.561425
Target:  5'- cGCUGUAUCGagaauuCCAGAUCACgGucGCGCa -3'
miRNA:   3'- cCGAUAUAGCc-----GGUCUGGUGgC--CGUG- -5'
26489 3' -56.2 NC_005357.1 + 23228 0.66 0.561425
Target:  5'- cGCggagaaCGGCCAGaacaucaucgacGCCGgCGGCACg -3'
miRNA:   3'- cCGauaua-GCCGGUC------------UGGUgGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 4197 0.66 0.550466
Target:  5'- gGGC-AUGUUGGCCGcgagcacgucgcGGCUugCGGCuuGCg -3'
miRNA:   3'- -CCGaUAUAGCCGGU------------CUGGugGCCG--UG- -5'
26489 3' -56.2 NC_005357.1 + 34647 0.66 0.550466
Target:  5'- cGGCgaaggGUGgacgcCGGCgCAGAUCgcGCCGGUGCu -3'
miRNA:   3'- -CCGa----UAUa----GCCG-GUCUGG--UGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 34784 0.66 0.550466
Target:  5'- aGCaAUGUCgauucugcaaGGCCaAGGCCAcguguCCGGCGCu -3'
miRNA:   3'- cCGaUAUAG----------CCGG-UCUGGU-----GGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 27435 0.66 0.550466
Target:  5'- cGCgcccggCGGCCgcAGGCC-CUGGCGCu -3'
miRNA:   3'- cCGauaua-GCCGG--UCUGGuGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 609 0.66 0.550466
Target:  5'- uGCgg-GUCGGCCAGcAgCGCCGuGgACa -3'
miRNA:   3'- cCGauaUAGCCGGUC-UgGUGGC-CgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.