miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 3' -51.4 NC_005357.1 + 22420 0.66 0.888724
Target:  5'- --aGGCgCGCCAUGcCGAGCAaguugGCGAGu -3'
miRNA:   3'- gcaCUG-GCGGUGCaGCUUGU-----UGUUCc -5'
26490 3' -51.4 NC_005357.1 + 31674 0.66 0.886454
Target:  5'- gCG-GGCCGaagucgagcgcgccCUugG-CGAGCAGCAAGGc -3'
miRNA:   3'- -GCaCUGGC--------------GGugCaGCUUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 7583 0.66 0.881063
Target:  5'- aGUaGCCGCCGCGUaGggU--CAGGGu -3'
miRNA:   3'- gCAcUGGCGGUGCAgCuuGuuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 9812 0.66 0.881063
Target:  5'- --cGACCGCgGCGUCGcGGCccuuGACGcGGg -3'
miRNA:   3'- gcaCUGGCGgUGCAGC-UUG----UUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 38851 0.66 0.881063
Target:  5'- aCGUGAcCCGgCGCGUCGcugaaauuuauGCGGCGcGGu -3'
miRNA:   3'- -GCACU-GGCgGUGCAGCu----------UGUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 6740 0.66 0.881063
Target:  5'- --gGGCCGCCGCGcUC-AAUAGCGgaaAGGu -3'
miRNA:   3'- gcaCUGGCGGUGC-AGcUUGUUGU---UCC- -5'
26490 3' -51.4 NC_005357.1 + 36857 0.66 0.873131
Target:  5'- gGUGGCgGCCAgcguuggcgcCGUCGAuaccguggcggGCGACcuGGg -3'
miRNA:   3'- gCACUGgCGGU----------GCAGCU-----------UGUUGuuCC- -5'
26490 3' -51.4 NC_005357.1 + 19331 0.66 0.873131
Target:  5'- cCGUGGgCGCCGCcGUUG-GCGuCGGGGc -3'
miRNA:   3'- -GCACUgGCGGUG-CAGCuUGUuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 13111 0.66 0.873131
Target:  5'- --cGACCGCCACcgccUUGAaguGCuggGCAAGGg -3'
miRNA:   3'- gcaCUGGCGGUGc---AGCU---UGu--UGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 1587 0.66 0.872323
Target:  5'- aGUGGCCGCCGCcuuccuggugGUCGAguGCGuugguuuGCGuGGu -3'
miRNA:   3'- gCACUGGCGGUG----------CAGCU--UGU-------UGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 19245 0.66 0.864934
Target:  5'- --cGACCuGCUGCuGUCGcacCAGCAGGGg -3'
miRNA:   3'- gcaCUGG-CGGUG-CAGCuu-GUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 19184 0.66 0.864934
Target:  5'- cCGUG-CCGCCGgCGUCGAugAuguucuGGc -3'
miRNA:   3'- -GCACuGGCGGU-GCAGCUugUuguu--CC- -5'
26490 3' -51.4 NC_005357.1 + 11996 0.66 0.856481
Target:  5'- -uUGGCCuuuuCCACGUCGGccaGCAGCGcGGc -3'
miRNA:   3'- gcACUGGc---GGUGCAGCU---UGUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 5319 0.66 0.856481
Target:  5'- cCGUaGGCCGCgagCACGUgGcGCAGCAuGGc -3'
miRNA:   3'- -GCA-CUGGCG---GUGCAgCuUGUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 22670 0.67 0.847779
Target:  5'- --aGACCGCCuCGUgGccGGCAACAAcGGc -3'
miRNA:   3'- gcaCUGGCGGuGCAgC--UUGUUGUU-CC- -5'
26490 3' -51.4 NC_005357.1 + 39679 0.67 0.847779
Target:  5'- aGUGGUCGgCACGccCGAGCAGCGccGGGc -3'
miRNA:   3'- gCACUGGCgGUGCa-GCUUGUUGU--UCC- -5'
26490 3' -51.4 NC_005357.1 + 15711 0.67 0.847779
Target:  5'- --cGuCCGCCugGgcaUCGAACuggcGCGAGGc -3'
miRNA:   3'- gcaCuGGCGGugC---AGCUUGu---UGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 14040 0.67 0.842442
Target:  5'- ---cGCCGCCgGCGUCGAACuggaacaccucgcCAAGGa -3'
miRNA:   3'- gcacUGGCGG-UGCAGCUUGuu-----------GUUCC- -5'
26490 3' -51.4 NC_005357.1 + 5595 0.67 0.824055
Target:  5'- cCGUGucgauguCCGCCucguugguagccacgGCGUCGAuguUGGCGAGGu -3'
miRNA:   3'- -GCACu------GGCGG---------------UGCAGCUu--GUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 11155 0.67 0.820273
Target:  5'- ---cGCUGCCACGUCGGGguCAACGAa- -3'
miRNA:   3'- gcacUGGCGGUGCAGCUU--GUUGUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.