miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 5' -57.4 NC_005357.1 + 36776 0.66 0.567826
Target:  5'- aCAgCUACCGCUGguuuccgcCGUG--UACGGCCa -3'
miRNA:   3'- -GUgGAUGGCGAU--------GCACcaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 28273 0.66 0.567826
Target:  5'- gCACCaugACCGC-GCGcugGGaCACGGCgCa -3'
miRNA:   3'- -GUGGa--UGGCGaUGCa--CCaGUGCCGgG- -5'
26490 5' -57.4 NC_005357.1 + 7539 0.66 0.567826
Target:  5'- -uUCUuCCGC-ACGcUGGcUCGCGGCCg -3'
miRNA:   3'- guGGAuGGCGaUGC-ACC-AGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 23354 0.66 0.557032
Target:  5'- gGCCUcGCCGCcgAUGaacacGGUgGCGuGCCCg -3'
miRNA:   3'- gUGGA-UGGCGa-UGCa----CCAgUGC-CGGG- -5'
26490 5' -57.4 NC_005357.1 + 1140 0.66 0.557032
Target:  5'- aACCguuagcuCgCGCUACGgcggcGGUCACGcCCCa -3'
miRNA:   3'- gUGGau-----G-GCGAUGCa----CCAGUGCcGGG- -5'
26490 5' -57.4 NC_005357.1 + 19490 0.66 0.546297
Target:  5'- uGCCggugggcagGCCGCUGCGaaccgUGGUCuuGuGCUCg -3'
miRNA:   3'- gUGGa--------UGGCGAUGC-----ACCAGugC-CGGG- -5'
26490 5' -57.4 NC_005357.1 + 42308 0.66 0.525035
Target:  5'- gCACCUA-CGCgaaGUGGUUggACGGCgCg -3'
miRNA:   3'- -GUGGAUgGCGaugCACCAG--UGCCGgG- -5'
26490 5' -57.4 NC_005357.1 + 14272 0.66 0.525035
Target:  5'- gGCCUGCUGCaccaUGCuGUcGGcgaUGCGGCCCa -3'
miRNA:   3'- gUGGAUGGCG----AUG-CA-CCa--GUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 31299 0.66 0.525035
Target:  5'- aGCCUGgCGaCcGCGUGGU---GGCCCg -3'
miRNA:   3'- gUGGAUgGC-GaUGCACCAgugCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 13557 0.66 0.525035
Target:  5'- aCGCCaGCaGCgaggACGUGG-CGCGGCgCu -3'
miRNA:   3'- -GUGGaUGgCGa---UGCACCaGUGCCGgG- -5'
26490 5' -57.4 NC_005357.1 + 6188 0.66 0.525035
Target:  5'- -uCUUGCCGCaGCGUuugcaGGUgACGGCgCg -3'
miRNA:   3'- guGGAUGGCGaUGCA-----CCAgUGCCGgG- -5'
26490 5' -57.4 NC_005357.1 + 41632 0.66 0.514521
Target:  5'- cCACCUGCUGacgGCGauUGcgcaGCGGCCCg -3'
miRNA:   3'- -GUGGAUGGCga-UGC--ACcag-UGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 28586 0.66 0.514521
Target:  5'- gGCC-ACCgGCaGCGUGGUguCGGUCa -3'
miRNA:   3'- gUGGaUGG-CGaUGCACCAguGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 1988 0.66 0.514521
Target:  5'- cCACCUGCCGUgGC-UGaUCuugaGGCCCa -3'
miRNA:   3'- -GUGGAUGGCGaUGcACcAGug--CCGGG- -5'
26490 5' -57.4 NC_005357.1 + 5317 0.66 0.514521
Target:  5'- gGCCguagGCCGCgagcACGUGGcgcagCAUGGCa- -3'
miRNA:   3'- gUGGa---UGGCGa---UGCACCa----GUGCCGgg -5'
26490 5' -57.4 NC_005357.1 + 18442 0.67 0.504094
Target:  5'- -uCCUgcACCGaaaACGUgacGGUCGCGGCgCCg -3'
miRNA:   3'- guGGA--UGGCga-UGCA---CCAGUGCCG-GG- -5'
26490 5' -57.4 NC_005357.1 + 40721 0.67 0.49376
Target:  5'- uCGCC-ACCGacacgauggACGaauUGGUCAUGGCUCg -3'
miRNA:   3'- -GUGGaUGGCga-------UGC---ACCAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 16078 0.67 0.49376
Target:  5'- aAUCUGCCGaUACGagcGG-CGCGGCCa -3'
miRNA:   3'- gUGGAUGGCgAUGCa--CCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 18735 0.67 0.483524
Target:  5'- gGCgCUACCgGCcugUACGU-GUC-CGGCCCg -3'
miRNA:   3'- gUG-GAUGG-CG---AUGCAcCAGuGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 22787 0.67 0.483524
Target:  5'- cCACCaACCcgacGCUGgcCGauGUCGCGGCCCg -3'
miRNA:   3'- -GUGGaUGG----CGAU--GCacCAGUGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.