miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 42226 0.69 0.2383
Target:  5'- uACGCCACCaugaUGCUGAUGgcggGGaugaCGCCg -3'
miRNA:   3'- -UGCGGUGGaa--GCGGCUGCa---CCg---GCGG- -5'
26495 5' -61.2 NC_005357.1 + 42103 0.67 0.327971
Target:  5'- gACGCCACCgccaGCCuGACGguagGGaCgGUCa -3'
miRNA:   3'- -UGCGGUGGaag-CGG-CUGCa---CC-GgCGG- -5'
26495 5' -61.2 NC_005357.1 + 41824 0.66 0.368554
Target:  5'- gGCGCUGCUg--GCCGACccgcaGGCgGCCa -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGca---CCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 41824 0.69 0.2383
Target:  5'- -gGCCAUCaUCGCCGACaUGGCgaaGCa -3'
miRNA:   3'- ugCGGUGGaAGCGGCUGcACCGg--CGg -5'
26495 5' -61.2 NC_005357.1 + 41747 0.69 0.215161
Target:  5'- -gGCCcgGCCggCGCCGcCGUaGGCgGCCu -3'
miRNA:   3'- ugCGG--UGGaaGCGGCuGCA-CCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 41601 0.66 0.385724
Target:  5'- uGC-CCACCUg-GCCGACGUucGGCaaggGCUg -3'
miRNA:   3'- -UGcGGUGGAagCGGCUGCA--CCGg---CGG- -5'
26495 5' -61.2 NC_005357.1 + 41377 0.66 0.347029
Target:  5'- gACGCCgguucgcggcgacauGCUgcCGCCGGcCGUGGCCuuCCa -3'
miRNA:   3'- -UGCGG---------------UGGaaGCGGCU-GCACCGGc-GG- -5'
26495 5' -61.2 NC_005357.1 + 41063 0.7 0.193974
Target:  5'- uGCGCUuCggUCGCCGgauGCGcaaGGCCGCCg -3'
miRNA:   3'- -UGCGGuGgaAGCGGC---UGCa--CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 40202 0.69 0.232327
Target:  5'- cGCGCCGCCUgcugCGCguggugcuaccCGACGaGGgCGUCg -3'
miRNA:   3'- -UGCGGUGGAa---GCG-----------GCUGCaCCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 39993 0.68 0.283762
Target:  5'- gGCGCCgAUCUUCgagGCCGGCcu-GCUGCCg -3'
miRNA:   3'- -UGCGG-UGGAAG---CGGCUGcacCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 39587 0.72 0.133633
Target:  5'- uCGCUgguGCUggCGCCGcugcGCGUGGCCGCg -3'
miRNA:   3'- uGCGG---UGGaaGCGGC----UGCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 38726 0.71 0.15872
Target:  5'- uGCGCCGCauggggcagcgcgUCGCCGugGUGGauuCGCa -3'
miRNA:   3'- -UGCGGUGga-----------AGCGGCugCACCg--GCGg -5'
26495 5' -61.2 NC_005357.1 + 38578 0.66 0.367709
Target:  5'- gGCGCCugguacaaCUUCGCCGAgGUcaugacucaccacGGCaagCGCCu -3'
miRNA:   3'- -UGCGGug------GAAGCGGCUgCA-------------CCG---GCGG- -5'
26495 5' -61.2 NC_005357.1 + 38337 0.67 0.320262
Target:  5'- aGCGCCGCCcaccUgGCCGGCcugaUGGCUaCCa -3'
miRNA:   3'- -UGCGGUGGa---AgCGGCUGc---ACCGGcGG- -5'
26495 5' -61.2 NC_005357.1 + 38197 0.68 0.270111
Target:  5'- uACGCCAUCUaCGUcugCGACGaUGGCacggugcgCGCCg -3'
miRNA:   3'- -UGCGGUGGAaGCG---GCUGC-ACCG--------GCGG- -5'
26495 5' -61.2 NC_005357.1 + 37673 0.66 0.335817
Target:  5'- aACGCCGagaaCaUCGCgGcCGUGGCCGa- -3'
miRNA:   3'- -UGCGGUg---GaAGCGgCuGCACCGGCgg -5'
26495 5' -61.2 NC_005357.1 + 37560 0.7 0.204329
Target:  5'- uGCGUgGC--UCGCCGGCGaggauuggaagcUGGCCGCUu -3'
miRNA:   3'- -UGCGgUGgaAGCGGCUGC------------ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 37526 0.7 0.188971
Target:  5'- gACGuuuCCACCgUgGCCGAaaaCGaGGCCGCCg -3'
miRNA:   3'- -UGC---GGUGGaAgCGGCU---GCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 37321 0.66 0.335817
Target:  5'- gGCGCCAgCCgcaccggaCGCUGGgccGGCCGCCu -3'
miRNA:   3'- -UGCGGU-GGaa------GCGGCUgcaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 36804 0.66 0.385724
Target:  5'- -gGCCACC-UCGCCaacaucgacGcCGUGGCUaCCa -3'
miRNA:   3'- ugCGGUGGaAGCGG---------CuGCACCGGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.