miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 25722 0.66 0.609633
Target:  5'- --gCGGCgGGGUCGucGUCCU--CACCGg -3'
miRNA:   3'- gaaGCCGgUCCGGU--UAGGGuuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 24142 0.66 0.609633
Target:  5'- --cCGGCUGcGcGCCuggCCCAGCGCCu -3'
miRNA:   3'- gaaGCCGGU-C-CGGuuaGGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 3780 0.66 0.609633
Target:  5'- -cUCGGUCGuGCCGAaagCCAGCGCCu -3'
miRNA:   3'- gaAGCCGGUcCGGUUag-GGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 19973 0.66 0.609633
Target:  5'- uUUCGGgCAGGCCGccgauGUCCgCGuagaacuCGCCa -3'
miRNA:   3'- gAAGCCgGUCCGGU-----UAGG-GUu------GUGGc -5'
26496 5' -56.2 NC_005357.1 + 9546 0.66 0.598498
Target:  5'- gUUCGGCCAGuG-CGAUCUgcuCGCCGg -3'
miRNA:   3'- gAAGCCGGUC-CgGUUAGGguuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 28356 0.66 0.598498
Target:  5'- uUUCuGGCacccUAGGCaacgacgCCCAGCGCCGg -3'
miRNA:   3'- gAAG-CCG----GUCCGguua---GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 9791 0.66 0.598498
Target:  5'- --gCGGCCAGGUCGcgC---ACGCCGa -3'
miRNA:   3'- gaaGCCGGUCCGGUuaGgguUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 5009 0.66 0.598498
Target:  5'- -gUCGGCgCAGuCCGcUUUCAGCGCCGc -3'
miRNA:   3'- gaAGCCG-GUCcGGUuAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 41769 0.66 0.598498
Target:  5'- --gCGGCCugguGGCUAcagCCUugGGCACCGa -3'
miRNA:   3'- gaaGCCGGu---CCGGUua-GGG--UUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 18422 0.66 0.59183
Target:  5'- -aUUGGCCGacgcgcccaccuucGCCAGUCUguGCGCCGa -3'
miRNA:   3'- gaAGCCGGUc-------------CGGUUAGGguUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 33640 0.66 0.587392
Target:  5'- --cCGGCgC-GGCCGA-CCCAucguGCGCCGc -3'
miRNA:   3'- gaaGCCG-GuCCGGUUaGGGU----UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 24584 0.66 0.576325
Target:  5'- --aCGGUCGGGCCG--UCCGGCguguccuuGCCGg -3'
miRNA:   3'- gaaGCCGGUCCGGUuaGGGUUG--------UGGC- -5'
26496 5' -56.2 NC_005357.1 + 4751 0.66 0.57191
Target:  5'- -cUCGGCCAcGGCCGcgauguucucggcGUucgcccacacugcgCCCAgcACGCCGg -3'
miRNA:   3'- gaAGCCGGU-CCGGU-------------UA--------------GGGU--UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 1195 0.66 0.565305
Target:  5'- -gUCGGCCGGGuuguuggaauaaCCGccCUCAugGCCGa -3'
miRNA:   3'- gaAGCCGGUCC------------GGUuaGGGUugUGGC- -5'
26496 5' -56.2 NC_005357.1 + 40660 0.66 0.558719
Target:  5'- -aUCGGCCcgacgcgccaggcgcAGGCCGG--CCAugACCGc -3'
miRNA:   3'- gaAGCCGG---------------UCCGGUUagGGUugUGGC- -5'
26496 5' -56.2 NC_005357.1 + 19126 0.66 0.551063
Target:  5'- --cCGGCCAGuGCCGGccgcaaacaggcauUCguggcgcacgCCGACACCGa -3'
miRNA:   3'- gaaGCCGGUC-CGGUU--------------AG----------GGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 24176 0.67 0.54344
Target:  5'- -cUCGGCgCAGGUCGugaCCGGCAUCc -3'
miRNA:   3'- gaAGCCG-GUCCGGUuagGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 41116 0.67 0.54344
Target:  5'- -gUCGGCCugguGGCCGucgCCCuggGCGCgGc -3'
miRNA:   3'- gaAGCCGGu---CCGGUua-GGGu--UGUGgC- -5'
26496 5' -56.2 NC_005357.1 + 11852 0.67 0.53261
Target:  5'- -gUUGGCCuGGgCGAaCCCcGCGCCa -3'
miRNA:   3'- gaAGCCGGuCCgGUUaGGGuUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 19781 0.67 0.53261
Target:  5'- uCUUCacugauuGCCAGGCCGG-CCCGguagaACACCc -3'
miRNA:   3'- -GAAGc------CGGUCCGGUUaGGGU-----UGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.