Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26549 | 5' | -60.2 | NC_005357.1 | + | 17925 | 0.66 | 0.435332 |
Target: 5'- aUCGGCGUG--GGCGCcagccccuacgacuuCCUGGCGCAGg -3' miRNA: 3'- gGGCUGCGCgaCUGCG---------------GGACUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 10380 | 0.66 | 0.43157 |
Target: 5'- gUCGAUGuCGCcGAUGUCCgggUGAUGCAGc -3' miRNA: 3'- gGGCUGC-GCGaCUGCGGG---ACUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 37633 | 0.66 | 0.43157 |
Target: 5'- uCCCGcaGCGCcaGCcGGCGUgCUgGGCGCAGu -3' miRNA: 3'- -GGGC--UGCG--CGaCUGCGgGA-CUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 3703 | 0.66 | 0.422249 |
Target: 5'- -gCGACGCGCUG-C-CCCaugcGGCGCAu -3' miRNA: 3'- ggGCUGCGCGACuGcGGGa---CUGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 8174 | 0.66 | 0.422249 |
Target: 5'- gCCCaGGaagGCGCUGGCGUCCUGcccguuCGuCAGc -3' miRNA: 3'- -GGG-CUg--CGCGACUGCGGGACu-----GC-GUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 32044 | 0.66 | 0.421323 |
Target: 5'- aCCCGGCGCGCUcgcacaacuaugcGACGCC---AUGCu- -3' miRNA: 3'- -GGGCUGCGCGA-------------CUGCGGgacUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 39585 | 0.66 | 0.413049 |
Target: 5'- cCUCGcugGUGCUGGCGCCgCUG-CGCGu -3' miRNA: 3'- -GGGCug-CGCGACUGCGG-GACuGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 21148 | 0.66 | 0.413049 |
Target: 5'- gCCGcCGUGUccGCGCCCUGguucaacaGCGCGGc -3' miRNA: 3'- gGGCuGCGCGacUGCGGGAC--------UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 12656 | 0.66 | 0.413049 |
Target: 5'- gCCGAaaucuCGCGC--ACGCgCCUGGCaGCAGc -3' miRNA: 3'- gGGCU-----GCGCGacUGCG-GGACUG-CGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 2576 | 0.66 | 0.403975 |
Target: 5'- gCCCaGCGCGUgcgcgcgcuUGcCGCCCUGuuGCAa -3' miRNA: 3'- -GGGcUGCGCG---------ACuGCGGGACugCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 12621 | 0.66 | 0.403075 |
Target: 5'- gCCGACGCGCucggcaucgcugcUGcCGUCCuuUGGCGuCGGg -3' miRNA: 3'- gGGCUGCGCG-------------ACuGCGGG--ACUGC-GUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 32096 | 0.66 | 0.395028 |
Target: 5'- -aCGGcCGCGUUGcucaACGCCCUGGcCGCu- -3' miRNA: 3'- ggGCU-GCGCGAC----UGCGGGACU-GCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 17111 | 0.66 | 0.395028 |
Target: 5'- uCCCGGCGaCGa--GCGCCg-GugGCAGg -3' miRNA: 3'- -GGGCUGC-GCgacUGCGGgaCugCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 16373 | 0.66 | 0.395028 |
Target: 5'- gCCGA-GCGCaUGgagcGCGCCCgccGCGCGGg -3' miRNA: 3'- gGGCUgCGCG-AC----UGCGGGac-UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 29818 | 0.66 | 0.386209 |
Target: 5'- gCCGAgCGCGUcGGCGCCau-GCGCAa -3' miRNA: 3'- gGGCU-GCGCGaCUGCGGgacUGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 28315 | 0.67 | 0.380114 |
Target: 5'- aCUCGGCGCGCUcGGCgucggacucgaugGCCUUGgccucgucgggcagcGCGCGGa -3' miRNA: 3'- -GGGCUGCGCGA-CUG-------------CGGGAC---------------UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 37043 | 0.67 | 0.377522 |
Target: 5'- uCgCGGCGCGCaccagUGACauaaCCCUGgGCGCGGu -3' miRNA: 3'- -GgGCUGCGCG-----ACUGc---GGGAC-UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 33854 | 0.67 | 0.377522 |
Target: 5'- gCCGcACGCGCggccuacGACGCCCaGgaugaggucgaGCGCGGc -3' miRNA: 3'- gGGC-UGCGCGa------CUGCGGGaC-----------UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 20735 | 0.67 | 0.368967 |
Target: 5'- gCCGACauGCuGCUGGCGCCgUagaGGCGCu- -3' miRNA: 3'- gGGCUG--CG-CGACUGCGGgA---CUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 35860 | 0.67 | 0.368967 |
Target: 5'- gCCGAgGCGgaUGGCaaGCCCU-ACGCGGg -3' miRNA: 3'- gGGCUgCGCg-ACUG--CGGGAcUGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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