miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26549 5' -60.2 NC_005357.1 + 17925 0.66 0.435332
Target:  5'- aUCGGCGUG--GGCGCcagccccuacgacuuCCUGGCGCAGg -3'
miRNA:   3'- gGGCUGCGCgaCUGCG---------------GGACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 10380 0.66 0.43157
Target:  5'- gUCGAUGuCGCcGAUGUCCgggUGAUGCAGc -3'
miRNA:   3'- gGGCUGC-GCGaCUGCGGG---ACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 37633 0.66 0.43157
Target:  5'- uCCCGcaGCGCcaGCcGGCGUgCUgGGCGCAGu -3'
miRNA:   3'- -GGGC--UGCG--CGaCUGCGgGA-CUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 8174 0.66 0.422249
Target:  5'- gCCCaGGaagGCGCUGGCGUCCUGcccguuCGuCAGc -3'
miRNA:   3'- -GGG-CUg--CGCGACUGCGGGACu-----GC-GUC- -5'
26549 5' -60.2 NC_005357.1 + 3703 0.66 0.422249
Target:  5'- -gCGACGCGCUG-C-CCCaugcGGCGCAu -3'
miRNA:   3'- ggGCUGCGCGACuGcGGGa---CUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 32044 0.66 0.421323
Target:  5'- aCCCGGCGCGCUcgcacaacuaugcGACGCC---AUGCu- -3'
miRNA:   3'- -GGGCUGCGCGA-------------CUGCGGgacUGCGuc -5'
26549 5' -60.2 NC_005357.1 + 39585 0.66 0.413049
Target:  5'- cCUCGcugGUGCUGGCGCCgCUG-CGCGu -3'
miRNA:   3'- -GGGCug-CGCGACUGCGG-GACuGCGUc -5'
26549 5' -60.2 NC_005357.1 + 21148 0.66 0.413049
Target:  5'- gCCGcCGUGUccGCGCCCUGguucaacaGCGCGGc -3'
miRNA:   3'- gGGCuGCGCGacUGCGGGAC--------UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 12656 0.66 0.413049
Target:  5'- gCCGAaaucuCGCGC--ACGCgCCUGGCaGCAGc -3'
miRNA:   3'- gGGCU-----GCGCGacUGCG-GGACUG-CGUC- -5'
26549 5' -60.2 NC_005357.1 + 2576 0.66 0.403975
Target:  5'- gCCCaGCGCGUgcgcgcgcuUGcCGCCCUGuuGCAa -3'
miRNA:   3'- -GGGcUGCGCG---------ACuGCGGGACugCGUc -5'
26549 5' -60.2 NC_005357.1 + 12621 0.66 0.403075
Target:  5'- gCCGACGCGCucggcaucgcugcUGcCGUCCuuUGGCGuCGGg -3'
miRNA:   3'- gGGCUGCGCG-------------ACuGCGGG--ACUGC-GUC- -5'
26549 5' -60.2 NC_005357.1 + 17111 0.66 0.395028
Target:  5'- uCCCGGCGaCGa--GCGCCg-GugGCAGg -3'
miRNA:   3'- -GGGCUGC-GCgacUGCGGgaCugCGUC- -5'
26549 5' -60.2 NC_005357.1 + 32096 0.66 0.395028
Target:  5'- -aCGGcCGCGUUGcucaACGCCCUGGcCGCu- -3'
miRNA:   3'- ggGCU-GCGCGAC----UGCGGGACU-GCGuc -5'
26549 5' -60.2 NC_005357.1 + 16373 0.66 0.395028
Target:  5'- gCCGA-GCGCaUGgagcGCGCCCgccGCGCGGg -3'
miRNA:   3'- gGGCUgCGCG-AC----UGCGGGac-UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 29818 0.66 0.386209
Target:  5'- gCCGAgCGCGUcGGCGCCau-GCGCAa -3'
miRNA:   3'- gGGCU-GCGCGaCUGCGGgacUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 28315 0.67 0.380114
Target:  5'- aCUCGGCGCGCUcGGCgucggacucgaugGCCUUGgccucgucgggcagcGCGCGGa -3'
miRNA:   3'- -GGGCUGCGCGA-CUG-------------CGGGAC---------------UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 33854 0.67 0.377522
Target:  5'- gCCGcACGCGCggccuacGACGCCCaGgaugaggucgaGCGCGGc -3'
miRNA:   3'- gGGC-UGCGCGa------CUGCGGGaC-----------UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 37043 0.67 0.377522
Target:  5'- uCgCGGCGCGCaccagUGACauaaCCCUGgGCGCGGu -3'
miRNA:   3'- -GgGCUGCGCG-----ACUGc---GGGAC-UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 20735 0.67 0.368967
Target:  5'- gCCGACauGCuGCUGGCGCCgUagaGGCGCu- -3'
miRNA:   3'- gGGCUG--CG-CGACUGCGGgA---CUGCGuc -5'
26549 5' -60.2 NC_005357.1 + 35860 0.67 0.368967
Target:  5'- gCCGAgGCGgaUGGCaaGCCCU-ACGCGGg -3'
miRNA:   3'- gGGCUgCGCg-ACUG--CGGGAcUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.