miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26587 5' -50.4 NC_005357.1 + 30022 0.66 0.914468
Target:  5'- aGGACggCAUCAagGCCGCAuACAAGc -3'
miRNA:   3'- gCUUGa-GUGGUggUGGCGUuUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 8741 0.66 0.907738
Target:  5'- gCGGGCgCGgCGCUACCGUcAACAuGGa -3'
miRNA:   3'- -GCUUGaGUgGUGGUGGCGuUUGUuCC- -5'
26587 5' -50.4 NC_005357.1 + 34583 0.66 0.907738
Target:  5'- gCGaAGCcCGCCucACCAUCGCGcugaacaugggcAACGAGGg -3'
miRNA:   3'- -GC-UUGaGUGG--UGGUGGCGU------------UUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 7481 0.66 0.907738
Target:  5'- aGGACUCgACCAgauCgACCGCGcccAGCAGGu -3'
miRNA:   3'- gCUUGAG-UGGU---GgUGGCGU---UUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 23229 0.66 0.907738
Target:  5'- uCGGcCUCgGCCACCgACCGCGccucGCuGGGg -3'
miRNA:   3'- -GCUuGAG-UGGUGG-UGGCGUu---UGuUCC- -5'
26587 5' -50.4 NC_005357.1 + 41918 0.66 0.907738
Target:  5'- aGAAC-CGCCugcaaGCCGCCGCGGcGCAGu- -3'
miRNA:   3'- gCUUGaGUGG-----UGGUGGCGUU-UGUUcc -5'
26587 5' -50.4 NC_005357.1 + 39885 0.66 0.90071
Target:  5'- aCGAGCgcgGCCcCUACCGCGAAUuccuGGu -3'
miRNA:   3'- -GCUUGag-UGGuGGUGGCGUUUGuu--CC- -5'
26587 5' -50.4 NC_005357.1 + 38230 0.66 0.90071
Target:  5'- gCGAcguGCUCGCgGCCAacaugcCCGCcauCGAGGc -3'
miRNA:   3'- -GCU---UGAGUGgUGGU------GGCGuuuGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 4993 0.66 0.90071
Target:  5'- ---gUUCGCCGCUACCGCAuuGAUAuuguuGGc -3'
miRNA:   3'- gcuuGAGUGGUGGUGGCGU--UUGUu----CC- -5'
26587 5' -50.4 NC_005357.1 + 37511 0.66 0.896352
Target:  5'- gCGGGCaUCGCUGCCgacguuuccaccgugGCCGaAAACGAGGc -3'
miRNA:   3'- -GCUUG-AGUGGUGG---------------UGGCgUUUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 24071 0.66 0.893389
Target:  5'- ---cCUCGCCGCCG--GCAAACAGGu -3'
miRNA:   3'- gcuuGAGUGGUGGUggCGUUUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 23557 0.66 0.893389
Target:  5'- uCGAACUCAUC-CCgaaCGUggGCAuGGg -3'
miRNA:   3'- -GCUUGAGUGGuGGug-GCGuuUGUuCC- -5'
26587 5' -50.4 NC_005357.1 + 24379 0.66 0.893389
Target:  5'- gCGcAUUCGCCACCACaacuCGCugcGCAAGu -3'
miRNA:   3'- -GCuUGAGUGGUGGUG----GCGuu-UGUUCc -5'
26587 5' -50.4 NC_005357.1 + 31160 0.66 0.893389
Target:  5'- cCGAGCgUC-CCAgCGCCGCAGcGCAAa- -3'
miRNA:   3'- -GCUUG-AGuGGUgGUGGCGUU-UGUUcc -5'
26587 5' -50.4 NC_005357.1 + 6461 0.66 0.893389
Target:  5'- cCGAACUCACgCACCAC-GaccAUGAGGc -3'
miRNA:   3'- -GCUUGAGUG-GUGGUGgCguuUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 38597 0.66 0.885778
Target:  5'- cCGAGgUCAugacUCACCACgGCAAGCGc-- -3'
miRNA:   3'- -GCUUgAGU----GGUGGUGgCGUUUGUucc -5'
26587 5' -50.4 NC_005357.1 + 13804 0.66 0.885778
Target:  5'- gGAACUgGCCgGCCucauCCGCGcccgguuCAAGGa -3'
miRNA:   3'- gCUUGAgUGG-UGGu---GGCGUuu-----GUUCC- -5'
26587 5' -50.4 NC_005357.1 + 34208 0.67 0.877884
Target:  5'- uGAcgGC-CGCCgACCAgCGCGAcuACGAGGc -3'
miRNA:   3'- gCU--UGaGUGG-UGGUgGCGUU--UGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 25298 0.67 0.877884
Target:  5'- gCGGcCUCGCCAUCuGCCGCAAcuuCGuGGu -3'
miRNA:   3'- -GCUuGAGUGGUGG-UGGCGUUu--GUuCC- -5'
26587 5' -50.4 NC_005357.1 + 10508 0.67 0.861271
Target:  5'- uCGAGCagCGCCucgaaaCGCCGCAGGCAc-- -3'
miRNA:   3'- -GCUUGa-GUGGug----GUGGCGUUUGUucc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.