miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26588 5' -58.6 NC_005357.1 + 29129 0.66 0.483524
Target:  5'- -aCAAcGCCGGC--CCCGGCGcGCUGCa -3'
miRNA:   3'- uaGUUcCGGCCGcaGGGCUGU-UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 1350 0.66 0.483524
Target:  5'- -cCGuGGUCGGCGgccuugcgcaUCCGGCGACCGa -3'
miRNA:   3'- uaGUuCCGGCCGCa---------GGGCUGUUGGCg -5'
26588 5' -58.6 NC_005357.1 + 4255 0.66 0.473391
Target:  5'- aGUCGGuGCCGGcCGUCagcgCCGGCAuggugaugGCCGUg -3'
miRNA:   3'- -UAGUUcCGGCC-GCAG----GGCUGU--------UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 24155 0.66 0.473391
Target:  5'- ----uGGCCcaGCGcCUCGACGGCUGCg -3'
miRNA:   3'- uaguuCCGGc-CGCaGGGCUGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 38100 0.66 0.46038
Target:  5'- cAUCAAGGCUGGCaccaucguggagGUCaaCGGCAagcuggugcaguucACCGCc -3'
miRNA:   3'- -UAGUUCCGGCCG------------CAGg-GCUGU--------------UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 1464 0.66 0.453452
Target:  5'- -gCGcGGUCGGCGgccUCCUGGCAgGCCGg -3'
miRNA:   3'- uaGUuCCGGCCGC---AGGGCUGU-UGGCg -5'
26588 5' -58.6 NC_005357.1 + 5575 0.66 0.453452
Target:  5'- uGUCGAGGCCGGCauacUCCaCGAauuuGGCC-Ca -3'
miRNA:   3'- -UAGUUCCGGCCGc---AGG-GCUg---UUGGcG- -5'
26588 5' -58.6 NC_005357.1 + 19091 0.66 0.448539
Target:  5'- -gCGAGGCCGucgaauuGCGcggcuaccacgucaUCCCGGCcagugccGGCCGCa -3'
miRNA:   3'- uaGUUCCGGC-------CGC--------------AGGGCUG-------UUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 37113 0.66 0.443656
Target:  5'- uAUCcguGGCCGGCGaccuggaaaauaUCgacgccguggCCGACAacGCCGCg -3'
miRNA:   3'- -UAGuu-CCGGCCGC------------AG----------GGCUGU--UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 36343 0.66 0.443656
Target:  5'- -gCAAGGCC-GCG-CUCGACGACUucgagGCg -3'
miRNA:   3'- uaGUUCCGGcCGCaGGGCUGUUGG-----CG- -5'
26588 5' -58.6 NC_005357.1 + 25677 0.66 0.443656
Target:  5'- cGUCAucaGCCGGCGgaUUUCGGCAacGCUGCu -3'
miRNA:   3'- -UAGUuc-CGGCCGC--AGGGCUGU--UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 6385 0.66 0.443656
Target:  5'- aAUCAggcgcAGGCCGGCcggCCCGGugUAGUCGCg -3'
miRNA:   3'- -UAGU-----UCCGGCCGca-GGGCU--GUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 31287 0.66 0.443656
Target:  5'- -aCGuGGCa-GCGaagCCUGGCGACCGCg -3'
miRNA:   3'- uaGUuCCGgcCGCa--GGGCUGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 34232 0.66 0.442682
Target:  5'- -aCGAGGCCGuGCGcgaugaaaUCgCCGGCAGCauccgggCGCa -3'
miRNA:   3'- uaGUUCCGGC-CGC--------AG-GGCUGUUG-------GCG- -5'
26588 5' -58.6 NC_005357.1 + 17693 0.66 0.433018
Target:  5'- gGUCGAGGCCGcgcaggcGCGguggaagcggCCCGAcCGACUGg -3'
miRNA:   3'- -UAGUUCCGGC-------CGCa---------GGGCU-GUUGGCg -5'
26588 5' -58.6 NC_005357.1 + 28941 0.66 0.433018
Target:  5'- -cCAAGGCgCGGUcggcaucgcccagGUcaugCCCGAC-ACCGCg -3'
miRNA:   3'- uaGUUCCG-GCCG-------------CA----GGGCUGuUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 34997 0.67 0.424426
Target:  5'- cGUCGAGGaa-GUGUCCgGGCGcCCGCu -3'
miRNA:   3'- -UAGUUCCggcCGCAGGgCUGUuGGCG- -5'
26588 5' -58.6 NC_005357.1 + 31464 0.67 0.415
Target:  5'- -aCAGguGGCCGcaGUGUcCCCGGCugucGCCGCg -3'
miRNA:   3'- uaGUU--CCGGC--CGCA-GGGCUGu---UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 36916 0.67 0.405704
Target:  5'- ----cGGCCGGCGUgCCuACGACUuugGCa -3'
miRNA:   3'- uaguuCCGGCCGCAgGGcUGUUGG---CG- -5'
26588 5' -58.6 NC_005357.1 + 11418 0.67 0.405704
Target:  5'- ----cGGCCGGCaagCCCGugGACagguCGCg -3'
miRNA:   3'- uaguuCCGGCCGca-GGGCugUUG----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.