miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26591 5' -51.1 NC_005357.1 + 32576 0.66 0.885192
Target:  5'- -cGUAUCAGGacaccGCCGACGCUGug-ACCa -3'
miRNA:   3'- gcCAUAGUUC-----CGGCUGUGGUucaUGG- -5'
26591 5' -51.1 NC_005357.1 + 31100 0.66 0.885192
Target:  5'- uCGGUG-C-AGGCCGGCGaguGGUGCg -3'
miRNA:   3'- -GCCAUaGuUCCGGCUGUgguUCAUGg -5'
26591 5' -51.1 NC_005357.1 + 339 0.66 0.885192
Target:  5'- gCGGUggcGUCGcgcagcAGGCCGucCGCCAGGc-CCg -3'
miRNA:   3'- -GCCA---UAGU------UCCGGCu-GUGGUUCauGG- -5'
26591 5' -51.1 NC_005357.1 + 35577 0.66 0.880497
Target:  5'- uGGUGgggggccuacgaaAAGGCCGuCGCCGAGgGCa -3'
miRNA:   3'- gCCAUag-----------UUCCGGCuGUGGUUCaUGg -5'
26591 5' -51.1 NC_005357.1 + 33158 0.66 0.877312
Target:  5'- cCGGUGUaccGGGCCGACcgcuuCCugcGGUAUg -3'
miRNA:   3'- -GCCAUAgu-UCCGGCUGu----GGu--UCAUGg -5'
26591 5' -51.1 NC_005357.1 + 8797 0.66 0.877312
Target:  5'- uGG-GUC--GGCCG-CGCCGgucAGUACCg -3'
miRNA:   3'- gCCaUAGuuCCGGCuGUGGU---UCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 26659 0.66 0.869157
Target:  5'- gGGUAgaaaCGAGGCaaacgaGGCAaacCCAAGUugCc -3'
miRNA:   3'- gCCAUa---GUUCCGg-----CUGU---GGUUCAugG- -5'
26591 5' -51.1 NC_005357.1 + 5488 0.66 0.869157
Target:  5'- uGGUcugGUCGAGGUgccauaGCGCCAacucGGUGCCu -3'
miRNA:   3'- gCCA---UAGUUCCGgc----UGUGGU----UCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 32354 0.66 0.860736
Target:  5'- aGGUcgCugcGGUCGcCGCCGAGgccccgGCCg -3'
miRNA:   3'- gCCAuaGuu-CCGGCuGUGGUUCa-----UGG- -5'
26591 5' -51.1 NC_005357.1 + 37110 0.66 0.860736
Target:  5'- uGGUAUCcguGGCCGGCgACCuGGaaaaUAUCg -3'
miRNA:   3'- gCCAUAGuu-CCGGCUG-UGGuUC----AUGG- -5'
26591 5' -51.1 NC_005357.1 + 37684 0.66 0.860736
Target:  5'- ---cAUCGcGGCCGugGCCGAGaACa -3'
miRNA:   3'- gccaUAGUuCCGGCugUGGUUCaUGg -5'
26591 5' -51.1 NC_005357.1 + 34971 0.66 0.852056
Target:  5'- uGGUG-CAAGGCCauucGCGCgAAG-GCCg -3'
miRNA:   3'- gCCAUaGUUCCGGc---UGUGgUUCaUGG- -5'
26591 5' -51.1 NC_005357.1 + 29570 0.66 0.852056
Target:  5'- gGGUAUCGcgucAGGUCGGCcgcgcCCAGGcgcgcgguuUGCCa -3'
miRNA:   3'- gCCAUAGU----UCCGGCUGu----GGUUC---------AUGG- -5'
26591 5' -51.1 NC_005357.1 + 1692 0.67 0.843126
Target:  5'- aGGUAgUCGAGaaauucGCCGugGgCCGGcGUGCCg -3'
miRNA:   3'- gCCAU-AGUUC------CGGCugU-GGUU-CAUGG- -5'
26591 5' -51.1 NC_005357.1 + 23758 0.67 0.833955
Target:  5'- uGGUGUaacAGGCCGGgGgCGGGcgACCg -3'
miRNA:   3'- gCCAUAgu-UCCGGCUgUgGUUCa-UGG- -5'
26591 5' -51.1 NC_005357.1 + 36355 0.67 0.833955
Target:  5'- gGGUcgCGGGGCCGuauccCugCAAugGCCu -3'
miRNA:   3'- gCCAuaGUUCCGGCu----GugGUUcaUGG- -5'
26591 5' -51.1 NC_005357.1 + 32723 0.67 0.824555
Target:  5'- aGGcgAUgGAgGGCUGACGCCAug-ACCg -3'
miRNA:   3'- gCCa-UAgUU-CCGGCUGUGGUucaUGG- -5'
26591 5' -51.1 NC_005357.1 + 31837 0.67 0.824555
Target:  5'- gCGGUG-C-AGGCUGcGCGCCuGGGUACUa -3'
miRNA:   3'- -GCCAUaGuUCCGGC-UGUGG-UUCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 26877 0.67 0.805108
Target:  5'- gCGGaagCAAGGCUGACGgCAGuGUgACCu -3'
miRNA:   3'- -GCCauaGUUCCGGCUGUgGUU-CA-UGG- -5'
26591 5' -51.1 NC_005357.1 + 15518 0.67 0.805108
Target:  5'- gCGGUGaugggC-AGGCCGAUAUgCAcGGUGCCg -3'
miRNA:   3'- -GCCAUa----GuUCCGGCUGUG-GU-UCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.