miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 5' -62.1 NC_005357.1 + 13324 0.66 0.299928
Target:  5'- aGGCGGCGUaggcuuucGGCAggucGCCGCcgaaGuCGCGCAa -3'
miRNA:   3'- cCCGCCGCG--------UCGU----CGGCGa---C-GUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 23535 0.66 0.299928
Target:  5'- aGGCGGCGCAcGCGGUCGaugGC-CuCGg -3'
miRNA:   3'- cCCGCCGCGU-CGUCGGCga-CGuGuGU- -5'
26592 5' -62.1 NC_005357.1 + 40403 0.66 0.299928
Target:  5'- aGGCGGC-CGGUAuGCCGgUGCugGu- -3'
miRNA:   3'- cCCGCCGcGUCGU-CGGCgACGugUgu -5'
26592 5' -62.1 NC_005357.1 + 23739 0.66 0.299928
Target:  5'- cGGUGGCGCgcAGCAGCgccaUGCcgGCGC-CAc -3'
miRNA:   3'- cCCGCCGCG--UCGUCG----GCGa-CGUGuGU- -5'
26592 5' -62.1 NC_005357.1 + 35206 0.66 0.292634
Target:  5'- aGGGUGaGCGCGGCGcagauGCUGCcGUGgACAu -3'
miRNA:   3'- -CCCGC-CGCGUCGU-----CGGCGaCGUgUGU- -5'
26592 5' -62.1 NC_005357.1 + 29569 0.66 0.292634
Target:  5'- gGGGUaucGCGUcaGGuCGGCCGCgcccagGCGCGCGg -3'
miRNA:   3'- -CCCGc--CGCG--UC-GUCGGCGa-----CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 418 0.66 0.288325
Target:  5'- cGGCGGUGaucguCGGCcguaccuugucguugGGCUGCUGCGCGg- -3'
miRNA:   3'- cCCGCCGC-----GUCG---------------UCGGCGACGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 30841 0.66 0.28548
Target:  5'- cGGCGGCcagcCGGCGGCC-CUGgGCGgCAu -3'
miRNA:   3'- cCCGCCGc---GUCGUCGGcGACgUGU-GU- -5'
26592 5' -62.1 NC_005357.1 + 6622 0.66 0.278464
Target:  5'- -aGCgGGCGC-GUGG-CGCUGCGCGCGg -3'
miRNA:   3'- ccCG-CCGCGuCGUCgGCGACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 38579 0.66 0.278464
Target:  5'- uGGGCGGCG-AGguGC-GCaaagUGCGCugGa -3'
miRNA:   3'- -CCCGCCGCgUCguCGgCG----ACGUGugU- -5'
26592 5' -62.1 NC_005357.1 + 167 0.66 0.278464
Target:  5'- aGGCGGaUGCGccccGguGUCGCUGgGCACc -3'
miRNA:   3'- cCCGCC-GCGU----CguCGGCGACgUGUGu -5'
26592 5' -62.1 NC_005357.1 + 27521 0.66 0.271586
Target:  5'- aGGcCGGCcaGCAGCAGaUCGCcGCGCAg- -3'
miRNA:   3'- cCC-GCCG--CGUCGUC-GGCGaCGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 24117 0.66 0.264846
Target:  5'- -uGCGcGCGUAGgggucguagucCAGCCgGCUGCGCGCc -3'
miRNA:   3'- ccCGC-CGCGUC-----------GUCGG-CGACGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 4512 0.66 0.264846
Target:  5'- cGGGCGGCGCccgugaacGUGGCgUGCUGgGCGg- -3'
miRNA:   3'- -CCCGCCGCGu-------CGUCG-GCGACgUGUgu -5'
26592 5' -62.1 NC_005357.1 + 17706 0.66 0.264846
Target:  5'- cGGGcCGGgaaaugcccauCGCGGCAa--GCUGCGCGCAu -3'
miRNA:   3'- -CCC-GCC-----------GCGUCGUcggCGACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 39588 0.66 0.264846
Target:  5'- -cGCuGGUGCuGGC-GCCGCUGCGCGu- -3'
miRNA:   3'- ccCG-CCGCG-UCGuCGGCGACGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 34643 0.67 0.258241
Target:  5'- uGGGCGGCGaagGGUGGaCGCcgGCGCAg- -3'
miRNA:   3'- -CCCGCCGCg--UCGUCgGCGa-CGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 14899 0.67 0.258241
Target:  5'- aGGGUcuGCGCGGCGauCUGCUGCugGCc -3'
miRNA:   3'- -CCCGc-CGCGUCGUc-GGCGACGugUGu -5'
26592 5' -62.1 NC_005357.1 + 36043 0.67 0.258241
Target:  5'- aGGGCGcCGCGGCGGCCGaccuggUGUAacccaGCGc -3'
miRNA:   3'- -CCCGCcGCGUCGUCGGCg-----ACGUg----UGU- -5'
26592 5' -62.1 NC_005357.1 + 611 0.67 0.258241
Target:  5'- cGGGuCGGCcaGCAGC-GCCG-UGgACACGg -3'
miRNA:   3'- -CCC-GCCG--CGUCGuCGGCgACgUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.