miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26594 3' -60.5 NC_005357.1 + 2905 0.66 0.431942
Target:  5'- aCGCcGCGCgCCCCGa----UGUUCGCg -3'
miRNA:   3'- gGCGcUGCG-GGGGCgcuugACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 9866 0.66 0.431942
Target:  5'- -aGCGugGCaCCgGCGcGCUGCUucucggccaggCGCg -3'
miRNA:   3'- ggCGCugCGgGGgCGCuUGACGA-----------GCG- -5'
26594 3' -60.5 NC_005357.1 + 18403 0.66 0.431942
Target:  5'- gUCGCGuCGCCUUCGCuGAAUUGgCcgaCGCg -3'
miRNA:   3'- -GGCGCuGCGGGGGCG-CUUGAC-Ga--GCG- -5'
26594 3' -60.5 NC_005357.1 + 19901 0.66 0.431942
Target:  5'- aCGCG-CGCgCUgCGCG---UGCUCGCu -3'
miRNA:   3'- gGCGCuGCG-GGgGCGCuugACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 32662 0.66 0.429153
Target:  5'- gCCGCGAagcUGCCCgaCGUGAagcccgagcaguucGCcgacgUGCUCGCc -3'
miRNA:   3'- -GGCGCU---GCGGGg-GCGCU--------------UG-----ACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 1657 0.66 0.422685
Target:  5'- uCUGCG-CGUCCUguuugCGCGugauGCUGC-CGCg -3'
miRNA:   3'- -GGCGCuGCGGGG-----GCGCu---UGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 30276 0.66 0.422685
Target:  5'- aCCcCGACGCCUaCGCGGAa-GCgcagCGCg -3'
miRNA:   3'- -GGcGCUGCGGGgGCGCUUgaCGa---GCG- -5'
26594 3' -60.5 NC_005357.1 + 11782 0.66 0.422685
Target:  5'- cCCGaCGaauuggucuGCGCCCUcauuCGCGccGGCUGgUCGCa -3'
miRNA:   3'- -GGC-GC---------UGCGGGG----GCGC--UUGACgAGCG- -5'
26594 3' -60.5 NC_005357.1 + 35053 0.66 0.422685
Target:  5'- gCCGCGGUGCCCgCCGCuGGACgaacgaCGCc -3'
miRNA:   3'- -GGCGCUGCGGG-GGCG-CUUGacga--GCG- -5'
26594 3' -60.5 NC_005357.1 + 42010 0.66 0.422685
Target:  5'- aCCaaCGugGCCCgCGaCGuGCUGCUCa- -3'
miRNA:   3'- -GGc-GCugCGGGgGC-GCuUGACGAGcg -5'
26594 3' -60.5 NC_005357.1 + 7896 0.66 0.421766
Target:  5'- -gGCGGCGCgUgcguagaUCGCcAGCUGCUCGUu -3'
miRNA:   3'- ggCGCUGCGgG-------GGCGcUUGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 8160 0.66 0.419016
Target:  5'- gCGCuGCGUCCCUGCGcgugcgcccggauGCUGCcggcgauuucaUCGCg -3'
miRNA:   3'- gGCGcUGCGGGGGCGCu------------UGACG-----------AGCG- -5'
26594 3' -60.5 NC_005357.1 + 20280 0.66 0.413549
Target:  5'- gCCGuCGuuGCCCgCaccaguaGCGggUUGCUCGg -3'
miRNA:   3'- -GGC-GCugCGGG-Gg------CGCuuGACGAGCg -5'
26594 3' -60.5 NC_005357.1 + 2205 0.66 0.413549
Target:  5'- aUGcCGACGCCCUCGuCGggUaGCaccacgCGCa -3'
miRNA:   3'- gGC-GCUGCGGGGGC-GCuuGaCGa-----GCG- -5'
26594 3' -60.5 NC_005357.1 + 4207 0.66 0.413549
Target:  5'- gCCGCGA-GCaCgUCGCGGcuuGCgGCUUGCg -3'
miRNA:   3'- -GGCGCUgCG-GgGGCGCU---UGaCGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 35218 0.66 0.413549
Target:  5'- gCGCaGAUGCUgCCGUGGACa--UCGCg -3'
miRNA:   3'- gGCG-CUGCGGgGGCGCUUGacgAGCG- -5'
26594 3' -60.5 NC_005357.1 + 28870 0.66 0.404534
Target:  5'- gCCGCGccACGUCCUCGC----UGCUgGCg -3'
miRNA:   3'- -GGCGC--UGCGGGGGCGcuugACGAgCG- -5'
26594 3' -60.5 NC_005357.1 + 26372 0.66 0.395645
Target:  5'- gCGCGGCGgCCacgugCGCGAACUGgccuacaaCUgGCa -3'
miRNA:   3'- gGCGCUGCgGGg----GCGCUUGAC--------GAgCG- -5'
26594 3' -60.5 NC_005357.1 + 24640 0.66 0.386883
Target:  5'- aCUGCGcGCGCUUCuauccguucgcgCGCGAcucGCUGCUCGa -3'
miRNA:   3'- -GGCGC-UGCGGGG------------GCGCU---UGACGAGCg -5'
26594 3' -60.5 NC_005357.1 + 38855 0.66 0.386883
Target:  5'- gCCGCGgaucgguguACGCCCa-GCccGCUGCUgCGCu -3'
miRNA:   3'- -GGCGC---------UGCGGGggCGcuUGACGA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.