Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26597 | 3' | -59.5 | NC_005357.1 | + | 41339 | 0.66 | 0.48895 |
Target: 5'- aCCGCCGCcaacAUGAaguACGcGCGCCGGGu -3' miRNA: 3'- gGGCGGCGacc-UGCU---UGC-UGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 4041 | 0.66 | 0.479009 |
Target: 5'- gCCgGCCGC-GG-CGAGCGGCagGCCa-- -3' miRNA: 3'- -GGgCGGCGaCCuGCUUGCUG--CGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 37553 | 0.66 | 0.469169 |
Target: 5'- gCCGCCgucgccgcGCUGGGC-AACGACcugaCCGGGc -3' miRNA: 3'- gGGCGG--------CGACCUGcUUGCUGc---GGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 36264 | 0.66 | 0.469169 |
Target: 5'- aCCgGCCugcGCUGGGaagauGACGGCGgCGAGu -3' miRNA: 3'- -GGgCGG---CGACCUgc---UUGCUGCgGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 7171 | 0.66 | 0.469169 |
Target: 5'- gCCgGgCGCUugucGGAUucggGGGCGACGCUGGGc -3' miRNA: 3'- -GGgCgGCGA----CCUG----CUUGCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 27887 | 0.66 | 0.469169 |
Target: 5'- uCUCGUCGCUGuuguccggcgccGGCG-ACGugGCUGAu -3' miRNA: 3'- -GGGCGGCGAC------------CUGCuUGCugCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 24675 | 0.66 | 0.459433 |
Target: 5'- gCCCGCCGC-GGGCc-ACGuccACGCCcAGg -3' miRNA: 3'- -GGGCGGCGaCCUGcuUGC---UGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 31958 | 0.66 | 0.459433 |
Target: 5'- gCCGgUGCUGcGCGAcuuccaggGCGACGCCaAGg -3' miRNA: 3'- gGGCgGCGACcUGCU--------UGCUGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 23933 | 0.66 | 0.453643 |
Target: 5'- aCCGCagcaagauggucaucCGgUGGACGAAucggcCGACGCCGc- -3' miRNA: 3'- gGGCG---------------GCgACCUGCUU-----GCUGCGGCuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 11148 | 0.66 | 0.449805 |
Target: 5'- gCCUGCUGCUGGGCcgccuGCGcacguugcguGCGCUGGu -3' miRNA: 3'- -GGGCGGCGACCUGcu---UGC----------UGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 11928 | 0.66 | 0.447893 |
Target: 5'- aCCGCCgugcccagGCUGGACaguaccgacuCGAUGCCGGu -3' miRNA: 3'- gGGCGG--------CGACCUGcuu-------GCUGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 34496 | 0.66 | 0.44029 |
Target: 5'- gCCGUgGCgugaaGGugGACGCCGAGc -3' miRNA: 3'- gGGCGgCGaccugCUugCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 24442 | 0.66 | 0.44029 |
Target: 5'- gCCGCgCGCggccucGGCGAcauUGACGCCGAc -3' miRNA: 3'- gGGCG-GCGac----CUGCUu--GCUGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 13500 | 0.66 | 0.44029 |
Target: 5'- aCCgCGCCuuUGGGCGAgguaaGCGguuugccguccGCGCCGAa -3' miRNA: 3'- -GG-GCGGcgACCUGCU-----UGC-----------UGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 19321 | 0.67 | 0.43089 |
Target: 5'- aCCGCUGUcgccgUGGGCGccgccguUGGCGUCGGGg -3' miRNA: 3'- gGGCGGCG-----ACCUGCuu-----GCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 17263 | 0.67 | 0.43089 |
Target: 5'- aCCCGCCGacc-ACGAGCGAgGgCCGGu -3' miRNA: 3'- -GGGCGGCgaccUGCUUGCUgC-GGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 11233 | 0.67 | 0.428093 |
Target: 5'- uCCCGCCcacgcccacuaGCgUGG-CGAugaggguuugcgcuGCGGCGCUGGGa -3' miRNA: 3'- -GGGCGG-----------CG-ACCuGCU--------------UGCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 26219 | 0.67 | 0.421609 |
Target: 5'- gCUGCUGCUcacgucuucGGGCGAAUGGCGCgUGGc -3' miRNA: 3'- gGGCGGCGA---------CCUGCUUGCUGCG-GCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 17723 | 0.67 | 0.41245 |
Target: 5'- gCCCGaCCGaCUGGcacCGAugGACaGCCuGGGc -3' miRNA: 3'- -GGGC-GGC-GACCu--GCUugCUG-CGG-CUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 4035 | 0.67 | 0.41245 |
Target: 5'- -aUGCCGCgcgGGuCGAGCG-CaGCCGGGc -3' miRNA: 3'- ggGCGGCGa--CCuGCUUGCuG-CGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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