Results 1 - 20 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 14390 | 0.66 | 0.777887 |
Target: 5'- uCGCCGAcguguucuucGGCGACGCCGacaUGAUCgGCUu -3' miRNA: 3'- uGUGGCU----------CUGUUGCGGU---ACUGGaUGA- -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 38548 | 0.66 | 0.777887 |
Target: 5'- gGCGgCGAcGGCAGCGC---GGCCUACa -3' miRNA: 3'- -UGUgGCU-CUGUUGCGguaCUGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 35402 | 0.66 | 0.777887 |
Target: 5'- uACGCgCGAGAuCAACGCCAaGuCCU-Cg -3' miRNA: 3'- -UGUG-GCUCU-GUUGCGGUaCuGGAuGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 33071 | 0.66 | 0.776847 |
Target: 5'- uCAUCGGGucgcgcaGCGACGCgGcGGCCUACa -3' miRNA: 3'- uGUGGCUC-------UGUUGCGgUaCUGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 17122 | 0.66 | 0.767413 |
Target: 5'- aGCGCCGGuGGCAGgGCCGgccgcacGACCUcaagGCa -3' miRNA: 3'- -UGUGGCU-CUGUUgCGGUa------CUGGA----UGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 7933 | 0.66 | 0.766357 |
Target: 5'- aACACCGGcgcgaggauuuccGACAGCuugcCCGUGGCCUcgGCg -3' miRNA: 3'- -UGUGGCU-------------CUGUUGc---GGUACUGGA--UGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 35819 | 0.66 | 0.756788 |
Target: 5'- gGCGgCG-GACuACGCCAUGcUCUACg -3' miRNA: 3'- -UGUgGCuCUGuUGCGGUACuGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 32363 | 0.66 | 0.756788 |
Target: 5'- uCGCCccGACGACGCCucgGACgCUAUUg -3' miRNA: 3'- uGUGGcuCUGUUGCGGua-CUG-GAUGA- -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 8444 | 0.66 | 0.756788 |
Target: 5'- aACAUCGGcGCGAUGUCGgcgucgaggUGGCCUGCg -3' miRNA: 3'- -UGUGGCUcUGUUGCGGU---------ACUGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 14229 | 0.66 | 0.756788 |
Target: 5'- -gGCCGAccugGACAagGCGCCGc-ACCUGCUg -3' miRNA: 3'- ugUGGCU----CUGU--UGCGGUacUGGAUGA- -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 13685 | 0.66 | 0.756788 |
Target: 5'- cGCACCGcgcuGGACGAUGCCAaGGCgCU-Ca -3' miRNA: 3'- -UGUGGC----UCUGUUGCGGUaCUG-GAuGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 28980 | 0.66 | 0.746025 |
Target: 5'- cGCGCCcGAGGC--CGCCAagcuggcgGGCCUGCc -3' miRNA: 3'- -UGUGG-CUCUGuuGCGGUa-------CUGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 34513 | 0.66 | 0.746025 |
Target: 5'- gACGCCGAGcGCAACGagCAgcuggcGAUCUACg -3' miRNA: 3'- -UGUGGCUC-UGUUGCg-GUa-----CUGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 24466 | 0.66 | 0.746025 |
Target: 5'- gACGCCGAcGACc-UGCUgcuUGGCCUGCg -3' miRNA: 3'- -UGUGGCU-CUGuuGCGGu--ACUGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 40378 | 0.66 | 0.744942 |
Target: 5'- gACcCCGAGGaauugcGCGCCGUGuucuaucGCCUGCg -3' miRNA: 3'- -UGuGGCUCUgu----UGCGGUAC-------UGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 14920 | 0.66 | 0.735138 |
Target: 5'- cGCGCCGAGAagcuGGCgGCCGaGGCCgccgGCa -3' miRNA: 3'- -UGUGGCUCUg---UUG-CGGUaCUGGa---UGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 41810 | 0.66 | 0.735138 |
Target: 5'- cGCGCCGAGGCuGAgGCCAUcaucGCCgACa -3' miRNA: 3'- -UGUGGCUCUG-UUgCGGUAc---UGGaUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 33577 | 0.67 | 0.724139 |
Target: 5'- gGCgACCGAGGcCAACGCgcUGGCCcGCg -3' miRNA: 3'- -UG-UGGCUCU-GUUGCGguACUGGaUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 35602 | 0.67 | 0.724139 |
Target: 5'- uCGCCGAgGGCAacgacgaaacccGCGCCGUGuCCcugGCUg -3' miRNA: 3'- uGUGGCU-CUGU------------UGCGGUACuGGa--UGA- -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 39993 | 0.67 | 0.71304 |
Target: 5'- gGCGCCGAucuuCGAgGCC--GGCCUGCUg -3' miRNA: 3'- -UGUGGCUcu--GUUgCGGuaCUGGAUGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home