miRNA display CGI


Results 21 - 40 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 32857 0.69 0.280243
Target:  5'- -aCGUGUUCGaccggaugcucGCCACCGGCGAGCa-- -3'
miRNA:   3'- ugGCGCAGGU-----------CGGUGGUCGUUCGacg -5'
26605 5' -58.9 NC_005357.1 + 22942 0.69 0.273191
Target:  5'- cGCaGCGgCCuGCCACCGGCAccuggcgcaAGCUGa -3'
miRNA:   3'- -UGgCGCaGGuCGGUGGUCGU---------UCGACg -5'
26605 5' -58.9 NC_005357.1 + 13760 0.71 0.18839
Target:  5'- cGCCGCG-CUggcgaGGCCGCCGGCAccgaucuGGCacUGCg -3'
miRNA:   3'- -UGGCGCaGG-----UCGGUGGUCGU-------UCG--ACG- -5'
26605 5' -58.9 NC_005357.1 + 14269 0.75 0.108342
Target:  5'- aACgGCGUggucgaUCuGaCCACCGGCAAGCUGCu -3'
miRNA:   3'- -UGgCGCA------GGuC-GGUGGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 40063 0.67 0.341884
Target:  5'- --gGCGUCU-GCCACguGCAGGCcgaauUGCg -3'
miRNA:   3'- uggCGCAGGuCGGUGguCGUUCG-----ACG- -5'
26605 5' -58.9 NC_005357.1 + 18902 0.68 0.302267
Target:  5'- gACCGCGUgC-GCCGCCuggaaGGCGcGCUcGCg -3'
miRNA:   3'- -UGGCGCAgGuCGGUGG-----UCGUuCGA-CG- -5'
26605 5' -58.9 NC_005357.1 + 40395 0.7 0.233843
Target:  5'- cGCCGUGUUCuaucGCCugcgcgacuucGCCAGCGAGC-GCc -3'
miRNA:   3'- -UGGCGCAGGu---CGG-----------UGGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 28977 0.75 0.105305
Target:  5'- cACCGCGcCCgaGGCCGCCaagcuGGCGGGcCUGCc -3'
miRNA:   3'- -UGGCGCaGG--UCGGUGG-----UCGUUC-GACG- -5'
26605 5' -58.9 NC_005357.1 + 18751 0.69 0.28744
Target:  5'- -aCGUGUCCGGCCcgaccgagggucGCCugguGCAGuuGCUGCc -3'
miRNA:   3'- ugGCGCAGGUCGG------------UGGu---CGUU--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 34473 0.75 0.096668
Target:  5'- -gCGCG-CCgaGGCCACgGGCAAGCUGUc -3'
miRNA:   3'- ugGCGCaGG--UCGGUGgUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 30216 0.7 0.240054
Target:  5'- uGCUGCGUCCcGaCCAggGGCAGGCaGCg -3'
miRNA:   3'- -UGGCGCAGGuC-GGUggUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 11107 0.69 0.285266
Target:  5'- cGCCGCGaCCugggauuccagccgGGCCACCAcGCGGucgccaggcuucGCUGCc -3'
miRNA:   3'- -UGGCGCaGG--------------UCGGUGGU-CGUU------------CGACG- -5'
26605 5' -58.9 NC_005357.1 + 16672 0.71 0.21034
Target:  5'- uGCCGcCGcCCAGCagcgcgcCCAGCGuGCUGCc -3'
miRNA:   3'- -UGGC-GCaGGUCGgu-----GGUCGUuCGACG- -5'
26605 5' -58.9 NC_005357.1 + 6565 0.71 0.192509
Target:  5'- cCCGCGUagGGCUugccauccgccucgGCCAGgGGGCUGCg -3'
miRNA:   3'- uGGCGCAggUCGG--------------UGGUCgUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 20108 0.73 0.147585
Target:  5'- -gCGCGUUCGGCacgGCCAGCAGcaucguGCUGCc -3'
miRNA:   3'- ugGCGCAGGUCGg--UGGUCGUU------CGACG- -5'
26605 5' -58.9 NC_005357.1 + 24126 0.73 0.135751
Target:  5'- uGCCGUGUCUAuuacaccgucGCCACCGGCccGCUGa -3'
miRNA:   3'- -UGGCGCAGGU----------CGGUGGUCGuuCGACg -5'
26605 5' -58.9 NC_005357.1 + 14597 0.67 0.376187
Target:  5'- -gCGCGgCCGgcGCCACC-GCGGGCaGCg -3'
miRNA:   3'- ugGCGCaGGU--CGGUGGuCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 20360 0.67 0.341884
Target:  5'- aGCCGCGcgCCGaccGCgACCcgAGCAAGC-GCg -3'
miRNA:   3'- -UGGCGCa-GGU---CGgUGG--UCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 8984 0.68 0.333669
Target:  5'- gGCCGUG-CCGGauuCGCCAGCGguGGCcgUGCc -3'
miRNA:   3'- -UGGCGCaGGUCg--GUGGUCGU--UCG--ACG- -5'
26605 5' -58.9 NC_005357.1 + 41431 0.68 0.306064
Target:  5'- cGCUGCGgugaaccacggcaCCGGCCaggcgGCCAaguggcuGCAAGCUGCc -3'
miRNA:   3'- -UGGCGCa------------GGUCGG-----UGGU-------CGUUCGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.