Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26607 | 3' | -60.2 | NC_005357.1 | + | 9314 | 0.66 | 0.403975 |
Target: 5'- gCGACCUGgCGG-CGcACgucgGCGCGGc -3' miRNA: 3'- gGCUGGACgGCCgGCuUGa---CGCGCUu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 13119 | 0.66 | 0.403975 |
Target: 5'- uCCGGgUUGCCGGCCag---GCGUGGGu -3' miRNA: 3'- -GGCUgGACGGCCGGcuugaCGCGCUU- -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 19088 | 0.66 | 0.403975 |
Target: 5'- gCGGCgagGCC-GUCGAAUUGCGCGGc -3' miRNA: 3'- gGCUGga-CGGcCGGCUUGACGCGCUu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 6616 | 0.66 | 0.403975 |
Target: 5'- aUGACCaGCgGGCgCGuggcGCUGCGCGc- -3' miRNA: 3'- gGCUGGaCGgCCG-GCu---UGACGCGCuu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 18483 | 0.66 | 0.394929 |
Target: 5'- gCCGACCUcGCCGGgCG---UGCGCc-- -3' miRNA: 3'- -GGCUGGA-CGGCCgGCuugACGCGcuu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 11837 | 0.66 | 0.394929 |
Target: 5'- aCCGGCCgcGCCgcGGuuGGcCUGgGCGAAc -3' miRNA: 3'- -GGCUGGa-CGG--CCggCUuGACgCGCUU- -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 18868 | 0.66 | 0.394929 |
Target: 5'- cCCGcACCUGCCGGC-GAugUcgGC-CGAGg -3' miRNA: 3'- -GGC-UGGACGGCCGgCUugA--CGcGCUU- -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 33635 | 0.66 | 0.394929 |
Target: 5'- aCUGACCgGCgCGGCCGAcccAUcgUGCGCc-- -3' miRNA: 3'- -GGCUGGaCG-GCCGGCU---UG--ACGCGcuu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 40889 | 0.66 | 0.386016 |
Target: 5'- uUCGGCUUuaCcaaGGCCGAACUgcuggGCGCGAAu -3' miRNA: 3'- -GGCUGGAcgG---CCGGCUUGA-----CGCGCUU- -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 31288 | 0.66 | 0.386016 |
Target: 5'- gCGGCCcaGCagcaGGCCGAACUGCucGCa-- -3' miRNA: 3'- gGCUGGa-CGg---CCGGCUUGACG--CGcuu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 21819 | 0.66 | 0.377236 |
Target: 5'- aCCGACCUGCgacGCCGc-CUG-GCGAAg -3' miRNA: 3'- -GGCUGGACGgc-CGGCuuGACgCGCUU- -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 33019 | 0.66 | 0.377236 |
Target: 5'- -aGACCUGCaaGCCcgcGGcCUGCGCGAc -3' miRNA: 3'- ggCUGGACGgcCGG---CUuGACGCGCUu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 14540 | 0.66 | 0.36093 |
Target: 5'- gCGACgUGCUGGgCGAGCacgccaagauggcgaGCGCGGAc -3' miRNA: 3'- gGCUGgACGGCCgGCUUGa--------------CGCGCUU- -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 14996 | 0.66 | 0.360085 |
Target: 5'- -gGGCCUG-CGGCCGccggGCGCGGu -3' miRNA: 3'- ggCUGGACgGCCGGCuugaCGCGCUu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 9200 | 0.66 | 0.360085 |
Target: 5'- uUGGCCUGCuCGGCgGcGCgGCGCa-- -3' miRNA: 3'- gGCUGGACG-GCCGgCuUGaCGCGcuu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 32919 | 0.66 | 0.360085 |
Target: 5'- aCGGCCUGCaCGGCU--GCUGUucggccaggGCGAc -3' miRNA: 3'- gGCUGGACG-GCCGGcuUGACG---------CGCUu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 378 | 0.67 | 0.351716 |
Target: 5'- uUGGCCUGCCgauugagcgcGGCC-AGC-GCGCGAc -3' miRNA: 3'- gGCUGGACGG----------CCGGcUUGaCGCGCUu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 41594 | 0.67 | 0.351716 |
Target: 5'- aCCaACCUGCCcaccuGGCCGAcguucggcaaggGCUggGCGCGGc -3' miRNA: 3'- -GGcUGGACGG-----CCGGCU------------UGA--CGCGCUu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 16168 | 0.67 | 0.329814 |
Target: 5'- gCCGACCagGCCGGCgggugcccgugccuuCGGcgacgcgcgcaaaACUGCGCGc- -3' miRNA: 3'- -GGCUGGa-CGGCCG---------------GCU-------------UGACGCGCuu -5' |
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26607 | 3' | -60.2 | NC_005357.1 | + | 33801 | 0.67 | 0.327443 |
Target: 5'- gCGACCUcGCCaccgcagcGGCCGAGaaGCGCa-- -3' miRNA: 3'- gGCUGGA-CGG--------CCGGCUUgaCGCGcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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