miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26607 3' -60.2 NC_005357.1 + 9314 0.66 0.403975
Target:  5'- gCGACCUGgCGG-CGcACgucgGCGCGGc -3'
miRNA:   3'- gGCUGGACgGCCgGCuUGa---CGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 13119 0.66 0.403975
Target:  5'- uCCGGgUUGCCGGCCag---GCGUGGGu -3'
miRNA:   3'- -GGCUgGACGGCCGGcuugaCGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 19088 0.66 0.403975
Target:  5'- gCGGCgagGCC-GUCGAAUUGCGCGGc -3'
miRNA:   3'- gGCUGga-CGGcCGGCUUGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 6616 0.66 0.403975
Target:  5'- aUGACCaGCgGGCgCGuggcGCUGCGCGc- -3'
miRNA:   3'- gGCUGGaCGgCCG-GCu---UGACGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 18483 0.66 0.394929
Target:  5'- gCCGACCUcGCCGGgCG---UGCGCc-- -3'
miRNA:   3'- -GGCUGGA-CGGCCgGCuugACGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 11837 0.66 0.394929
Target:  5'- aCCGGCCgcGCCgcGGuuGGcCUGgGCGAAc -3'
miRNA:   3'- -GGCUGGa-CGG--CCggCUuGACgCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 18868 0.66 0.394929
Target:  5'- cCCGcACCUGCCGGC-GAugUcgGC-CGAGg -3'
miRNA:   3'- -GGC-UGGACGGCCGgCUugA--CGcGCUU- -5'
26607 3' -60.2 NC_005357.1 + 33635 0.66 0.394929
Target:  5'- aCUGACCgGCgCGGCCGAcccAUcgUGCGCc-- -3'
miRNA:   3'- -GGCUGGaCG-GCCGGCU---UG--ACGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 40889 0.66 0.386016
Target:  5'- uUCGGCUUuaCcaaGGCCGAACUgcuggGCGCGAAu -3'
miRNA:   3'- -GGCUGGAcgG---CCGGCUUGA-----CGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 31288 0.66 0.386016
Target:  5'- gCGGCCcaGCagcaGGCCGAACUGCucGCa-- -3'
miRNA:   3'- gGCUGGa-CGg---CCGGCUUGACG--CGcuu -5'
26607 3' -60.2 NC_005357.1 + 21819 0.66 0.377236
Target:  5'- aCCGACCUGCgacGCCGc-CUG-GCGAAg -3'
miRNA:   3'- -GGCUGGACGgc-CGGCuuGACgCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 33019 0.66 0.377236
Target:  5'- -aGACCUGCaaGCCcgcGGcCUGCGCGAc -3'
miRNA:   3'- ggCUGGACGgcCGG---CUuGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 14540 0.66 0.36093
Target:  5'- gCGACgUGCUGGgCGAGCacgccaagauggcgaGCGCGGAc -3'
miRNA:   3'- gGCUGgACGGCCgGCUUGa--------------CGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 14996 0.66 0.360085
Target:  5'- -gGGCCUG-CGGCCGccggGCGCGGu -3'
miRNA:   3'- ggCUGGACgGCCGGCuugaCGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 9200 0.66 0.360085
Target:  5'- uUGGCCUGCuCGGCgGcGCgGCGCa-- -3'
miRNA:   3'- gGCUGGACG-GCCGgCuUGaCGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 32919 0.66 0.360085
Target:  5'- aCGGCCUGCaCGGCU--GCUGUucggccaggGCGAc -3'
miRNA:   3'- gGCUGGACG-GCCGGcuUGACG---------CGCUu -5'
26607 3' -60.2 NC_005357.1 + 378 0.67 0.351716
Target:  5'- uUGGCCUGCCgauugagcgcGGCC-AGC-GCGCGAc -3'
miRNA:   3'- gGCUGGACGG----------CCGGcUUGaCGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 41594 0.67 0.351716
Target:  5'- aCCaACCUGCCcaccuGGCCGAcguucggcaaggGCUggGCGCGGc -3'
miRNA:   3'- -GGcUGGACGG-----CCGGCU------------UGA--CGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 16168 0.67 0.329814
Target:  5'- gCCGACCagGCCGGCgggugcccgugccuuCGGcgacgcgcgcaaaACUGCGCGc- -3'
miRNA:   3'- -GGCUGGa-CGGCCG---------------GCU-------------UGACGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 33801 0.67 0.327443
Target:  5'- gCGACCUcGCCaccgcagcGGCCGAGaaGCGCa-- -3'
miRNA:   3'- gGCUGGA-CGG--------CCGGCUUgaCGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.