miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26610 3' -55.5 NC_005357.1 + 1315 0.67 0.558816
Target:  5'- gGGCGACggccaccaGGCCgaCAAGCgCGAGGa -3'
miRNA:   3'- -CCGCUGaag-----CCGGa-GUUCGgGUUCUg -5'
26610 3' -55.5 NC_005357.1 + 27427 0.68 0.494011
Target:  5'- uGGCGcaccGCgcccggCGGCCgCAGGCCCu-GGCg -3'
miRNA:   3'- -CCGC----UGaa----GCCGGaGUUCGGGuuCUG- -5'
26610 3' -55.5 NC_005357.1 + 19223 0.68 0.494011
Target:  5'- cGGacaGGCUguugaagcgCGGCgUCAGGCCCAuGAa -3'
miRNA:   3'- -CCg--CUGAa--------GCCGgAGUUCGGGUuCUg -5'
26610 3' -55.5 NC_005357.1 + 20096 0.67 0.523877
Target:  5'- uGGCGACUUCGGaaaaggcGCCCAGcACa -3'
miRNA:   3'- -CCGCUGAAGCCggaguu-CGGGUUcUG- -5'
26610 3' -55.5 NC_005357.1 + 29056 0.67 0.530369
Target:  5'- cGGCGGCUcguaGGCCaucagcgggucauccUCGGGCgCCGAGGu -3'
miRNA:   3'- -CCGCUGAag--CCGG---------------AGUUCG-GGUUCUg -5'
26610 3' -55.5 NC_005357.1 + 17836 0.67 0.533626
Target:  5'- gGGCGGgUUgaugcccgccaccgUGGCCUCGucGCCCAgguAGGCc -3'
miRNA:   3'- -CCGCUgAA--------------GCCGGAGUu-CGGGU---UCUG- -5'
26610 3' -55.5 NC_005357.1 + 2487 0.67 0.536889
Target:  5'- aGGCGGuCUUUGaaUUCGAGCgCCGAGAUu -3'
miRNA:   3'- -CCGCU-GAAGCcgGAGUUCG-GGUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 33085 0.67 0.547818
Target:  5'- aGCGACgcggCGGCCUaCAuccucGCCCAuGAa -3'
miRNA:   3'- cCGCUGaa--GCCGGA-GUu----CGGGUuCUg -5'
26610 3' -55.5 NC_005357.1 + 37122 0.67 0.547818
Target:  5'- cGCGGCcuaCGGCCUCGAccuGCC--AGACa -3'
miRNA:   3'- cCGCUGaa-GCCGGAGUU---CGGguUCUG- -5'
26610 3' -55.5 NC_005357.1 + 14909 0.68 0.492958
Target:  5'- cGGCGAuCUgcugcuggcCGGCCUCAAgugccgacugcgcGCCCAAcucGGCg -3'
miRNA:   3'- -CCGCU-GAa--------GCCGGAGUU-------------CGGGUU---CUG- -5'
26610 3' -55.5 NC_005357.1 + 18371 0.68 0.473161
Target:  5'- cGGCGGCgaggUUGGCCUUGccgauGGCgCCGGuGGCg -3'
miRNA:   3'- -CCGCUGa---AGCCGGAGU-----UCG-GGUU-CUG- -5'
26610 3' -55.5 NC_005357.1 + 637 0.69 0.432856
Target:  5'- cGGCGuc--CGGCgUCGAgucgguGCCCAAGGCu -3'
miRNA:   3'- -CCGCugaaGCCGgAGUU------CGGGUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 688 0.77 0.129869
Target:  5'- cGGCGGCgcCGGCCgggccGCCCAAGAUa -3'
miRNA:   3'- -CCGCUGaaGCCGGaguu-CGGGUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 4888 0.74 0.214232
Target:  5'- cGGCGACggCGGCCUCGuuuucGGCCaCGguGGAa -3'
miRNA:   3'- -CCGCUGaaGCCGGAGU-----UCGG-GU--UCUg -5'
26610 3' -55.5 NC_005357.1 + 10765 0.71 0.340693
Target:  5'- -uCGACUUCGGCCcgCAguucuucGGCCUggGAUu -3'
miRNA:   3'- ccGCUGAAGCCGGa-GU-------UCGGGuuCUG- -5'
26610 3' -55.5 NC_005357.1 + 23215 0.7 0.385411
Target:  5'- cGGUGAaUUCGGCCUCGgccucGGCCaccGACc -3'
miRNA:   3'- -CCGCUgAAGCCGGAGU-----UCGGguuCUG- -5'
26610 3' -55.5 NC_005357.1 + 7247 0.7 0.394622
Target:  5'- cGGCGAUgUCGGCC----GCCCAGGuCu -3'
miRNA:   3'- -CCGCUGaAGCCGGaguuCGGGUUCuG- -5'
26610 3' -55.5 NC_005357.1 + 35183 0.7 0.401155
Target:  5'- cGGCGACaUCGGCC-CGcGCCaguggccgaaguugCAGGGCu -3'
miRNA:   3'- -CCGCUGaAGCCGGaGUuCGG--------------GUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 340 0.69 0.409654
Target:  5'- cGGUGGCgucgcgcagcaGGCCguccgcCAGGCCCGAGAa -3'
miRNA:   3'- -CCGCUGaag--------CCGGa-----GUUCGGGUUCUg -5'
26610 3' -55.5 NC_005357.1 + 7685 0.69 0.423095
Target:  5'- uGGCGGCgaucugCGGCCgguAGCCCucGAa -3'
miRNA:   3'- -CCGCUGaa----GCCGGaguUCGGGuuCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.