miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26610 3' -55.5 NC_005357.1 + 36234 0.81 0.072729
Target:  5'- cGGCGGCUaUCGGCUUCGGGuUCCAAGAg -3'
miRNA:   3'- -CCGCUGA-AGCCGGAGUUC-GGGUUCUg -5'
26610 3' -55.5 NC_005357.1 + 26971 0.68 0.494011
Target:  5'- cGGCaGCUUCGGCCaaGGGCgcgUCAAGAa -3'
miRNA:   3'- -CCGcUGAAGCCGGagUUCG---GGUUCUg -5'
26610 3' -55.5 NC_005357.1 + 10283 0.67 0.526038
Target:  5'- aGGuCGAgUUCGGCCUUGAGggauUCgGGGGCg -3'
miRNA:   3'- -CC-GCUgAAGCCGGAGUUC----GGgUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 8452 0.66 0.63702
Target:  5'- cGCGAUgUCGGCgUCGagguGGCCUgcGAUg -3'
miRNA:   3'- cCGCUGaAGCCGgAGU----UCGGGuuCUG- -5'
26610 3' -55.5 NC_005357.1 + 36148 0.72 0.286371
Target:  5'- gGGCGACcugUUCGGCCU---GCCCAGcGCg -3'
miRNA:   3'- -CCGCUG---AAGCCGGAguuCGGGUUcUG- -5'
26610 3' -55.5 NC_005357.1 + 12616 0.72 0.301381
Target:  5'- uGGuCGACgauucaUCGGCaUCGAGCgCGAGACa -3'
miRNA:   3'- -CC-GCUGa-----AGCCGgAGUUCGgGUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 33852 0.71 0.325022
Target:  5'- aGGcCGcACgcgCGGCCUaCGAcGCCCAGGAUg -3'
miRNA:   3'- -CC-GC-UGaa-GCCGGA-GUU-CGGGUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 9810 0.71 0.341533
Target:  5'- aGCGACcgCGGCgUCGcGGCCCuuGACg -3'
miRNA:   3'- cCGCUGaaGCCGgAGU-UCGGGuuCUG- -5'
26610 3' -55.5 NC_005357.1 + 7447 0.69 0.410605
Target:  5'- -uCGGCUUCGGCCUUcgcgcgaauggccuuGCaCCAGGACu -3'
miRNA:   3'- ccGCUGAAGCCGGAGuu-------------CG-GGUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 28897 0.68 0.494011
Target:  5'- aGGCGGCcgacagUUCGGCgCggacggCAAaccgcuuaccucGCCCAAGGCg -3'
miRNA:   3'- -CCGCUG------AAGCCG-Ga-----GUU------------CGGGUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 18879 0.69 0.432856
Target:  5'- cGGCGAUgUCGGCCg-AGGCCaucGACc -3'
miRNA:   3'- -CCGCUGaAGCCGGagUUCGGguuCUG- -5'
26610 3' -55.5 NC_005357.1 + 616 0.7 0.367419
Target:  5'- cGGCGAUgaUGGCCUC-AGCCUc-GGCg -3'
miRNA:   3'- -CCGCUGaaGCCGGAGuUCGGGuuCUG- -5'
26610 3' -55.5 NC_005357.1 + 12307 0.8 0.083722
Target:  5'- cGGCGGCguguucuggcgCGGCCUCAucGCCUggGACa -3'
miRNA:   3'- -CCGCUGaa---------GCCGGAGUu-CGGGuuCUG- -5'
26610 3' -55.5 NC_005357.1 + 40414 0.69 0.446739
Target:  5'- cGCGACUUCgccagcgagcgccugGGCCUCAagaucAGCCacuGGCa -3'
miRNA:   3'- cCGCUGAAG---------------CCGGAGU-----UCGGguuCUG- -5'
26610 3' -55.5 NC_005357.1 + 11407 0.79 0.100278
Target:  5'- cGCGAUUgccUCGGCCggCAAGCCCGuGGACa -3'
miRNA:   3'- cCGCUGA---AGCCGGa-GUUCGGGU-UCUG- -5'
26610 3' -55.5 NC_005357.1 + 8818 0.7 0.362135
Target:  5'- aGGCGguACUuggugUCGGCCUugauaccguccucgcCGacguAGCCCAGGACg -3'
miRNA:   3'- -CCGC--UGA-----AGCCGGA---------------GU----UCGGGUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 24581 0.68 0.48249
Target:  5'- gGGCGACga-GGCCacgguggcgggcaUCAAcccGCCCGAGGg -3'
miRNA:   3'- -CCGCUGaagCCGG-------------AGUU---CGGGUUCUg -5'
26610 3' -55.5 NC_005357.1 + 32811 0.68 0.503529
Target:  5'- cGCGACUUgaaGGCCcugaacgucgaacUCAcGCCCGAGGu -3'
miRNA:   3'- cCGCUGAAg--CCGG-------------AGUuCGGGUUCUg -5'
26610 3' -55.5 NC_005357.1 + 15158 0.74 0.213654
Target:  5'- cGGCGaACUgcgguucauugccUCGGCCaaGAGCCUggGGCg -3'
miRNA:   3'- -CCGC-UGA-------------AGCCGGagUUCGGGuuCUG- -5'
26610 3' -55.5 NC_005357.1 + 9313 0.72 0.309111
Target:  5'- cGGCGACaUUCagGGCCUUggGUUCAuGGGCg -3'
miRNA:   3'- -CCGCUG-AAG--CCGGAGuuCGGGU-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.