miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 5' -58.6 NC_005357.1 + 38170 0.66 0.490937
Target:  5'- aUGCCGGcGCUGAcGGCCggCAccgacuaCGCCa -3'
miRNA:   3'- cGCGGCUcCGACU-CCGGuaGUa------GCGG- -5'
26621 5' -58.6 NC_005357.1 + 13874 0.66 0.490937
Target:  5'- cGCGCCGcgauGGCcGGcGGCCgcaagGUCGU-GCCg -3'
miRNA:   3'- -CGCGGCu---CCGaCU-CCGG-----UAGUAgCGG- -5'
26621 5' -58.6 NC_005357.1 + 20749 0.66 0.490937
Target:  5'- gGCGCCguaGAGGCgcuGcGCCGcgcucgacUCAUCGCg -3'
miRNA:   3'- -CGCGG---CUCCGacuC-CGGU--------AGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 20175 0.66 0.490937
Target:  5'- uGCGCCuugcGGCUuc-GCCuuGUCGUCGCCc -3'
miRNA:   3'- -CGCGGcu--CCGAcucCGG--UAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 32588 0.66 0.490937
Target:  5'- cCGCCGAcGCUGugaccaagcuGGCCcgCGUCaaggGCCg -3'
miRNA:   3'- cGCGGCUcCGACu---------CCGGuaGUAG----CGG- -5'
26621 5' -58.6 NC_005357.1 + 13904 0.66 0.480757
Target:  5'- gGCGUCGGGGUUGuuccaguucaGGGCgAU-GUCGCg -3'
miRNA:   3'- -CGCGGCUCCGAC----------UCCGgUAgUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 29090 0.66 0.480757
Target:  5'- gGCGCCGAGGUc-AGGCCcgugCGggacUUGCUg -3'
miRNA:   3'- -CGCGGCUCCGacUCCGGua--GU----AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 37500 0.66 0.480757
Target:  5'- gGCGcCCGAGGgcaaGAaGCUgGUCGUCGCCg -3'
miRNA:   3'- -CGC-GGCUCCga--CUcCGG-UAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 40397 0.66 0.480757
Target:  5'- uCGCCGAGGC---GGCCggUAU-GCCg -3'
miRNA:   3'- cGCGGCUCCGacuCCGGuaGUAgCGG- -5'
26621 5' -58.6 NC_005357.1 + 507 0.66 0.47068
Target:  5'- uGCGCCGcggcggcuugcAGGCgguucUGuucGGCCGUCAcCGCg -3'
miRNA:   3'- -CGCGGC-----------UCCG-----ACu--CCGGUAGUaGCGg -5'
26621 5' -58.6 NC_005357.1 + 35348 0.66 0.47068
Target:  5'- cGCGCCGuGGGU--AGGCCG-CggCGUCa -3'
miRNA:   3'- -CGCGGC-UCCGacUCCGGUaGuaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 11975 0.66 0.464686
Target:  5'- cGCGCCcccuGGCaacugauucagggcGAGGCCcugcccgcgcUCAUCGCCa -3'
miRNA:   3'- -CGCGGcu--CCGa-------------CUCCGGu---------AGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 24695 0.66 0.460712
Target:  5'- aCGCCcAGGCUGu--CCAUCggUGCCa -3'
miRNA:   3'- cGCGGcUCCGACuccGGUAGuaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 31030 0.66 0.460712
Target:  5'- -gGCCGAGGCaaucgcgcGGGCCAaCGUgCGCg -3'
miRNA:   3'- cgCGGCUCCGac------UCCGGUaGUA-GCGg -5'
26621 5' -58.6 NC_005357.1 + 6524 0.66 0.460712
Target:  5'- uUGgCGAGuuUuucGGGGUCGUCGUCGCCc -3'
miRNA:   3'- cGCgGCUCcgA---CUCCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 17850 0.66 0.460712
Target:  5'- aCGCCGGacGGCccGAccguGGCCGgccucgcCAUCGCCg -3'
miRNA:   3'- cGCGGCU--CCGa-CU----CCGGUa------GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 6277 0.66 0.450857
Target:  5'- cGCGCUG-GGC--AGGCCGaacagGUCGCCc -3'
miRNA:   3'- -CGCGGCuCCGacUCCGGUag---UAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35625 0.66 0.441119
Target:  5'- cGCGCCGugucccuGGCUGAccaGGCgGUCAUagauucCCa -3'
miRNA:   3'- -CGCGGCu------CCGACU---CCGgUAGUAgc----GG- -5'
26621 5' -58.6 NC_005357.1 + 1992 0.66 0.441119
Target:  5'- cUGCCGuGGCugaucuUGAGGCCcaggCGcUCGCUg -3'
miRNA:   3'- cGCGGCuCCG------ACUCCGGua--GU-AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 27965 0.66 0.441119
Target:  5'- gGCGagcaCGuccucgguGGGCUG-GGCCAUCAggcuguaGCCg -3'
miRNA:   3'- -CGCg---GC--------UCCGACuCCGGUAGUag-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.