Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 13874 | 0.66 | 0.490937 |
Target: 5'- cGCGCCGcgauGGCcGGcGGCCgcaagGUCGU-GCCg -3' miRNA: 3'- -CGCGGCu---CCGaCU-CCGG-----UAGUAgCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 38170 | 0.66 | 0.490937 |
Target: 5'- aUGCCGGcGCUGAcGGCCggCAccgacuaCGCCa -3' miRNA: 3'- cGCGGCUcCGACU-CCGGuaGUa------GCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 20749 | 0.66 | 0.490937 |
Target: 5'- gGCGCCguaGAGGCgcuGcGCCGcgcucgacUCAUCGCg -3' miRNA: 3'- -CGCGG---CUCCGacuC-CGGU--------AGUAGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 20175 | 0.66 | 0.490937 |
Target: 5'- uGCGCCuugcGGCUuc-GCCuuGUCGUCGCCc -3' miRNA: 3'- -CGCGGcu--CCGAcucCGG--UAGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 32588 | 0.66 | 0.490937 |
Target: 5'- cCGCCGAcGCUGugaccaagcuGGCCcgCGUCaaggGCCg -3' miRNA: 3'- cGCGGCUcCGACu---------CCGGuaGUAG----CGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 37500 | 0.66 | 0.480757 |
Target: 5'- gGCGcCCGAGGgcaaGAaGCUgGUCGUCGCCg -3' miRNA: 3'- -CGC-GGCUCCga--CUcCGG-UAGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 29090 | 0.66 | 0.480757 |
Target: 5'- gGCGCCGAGGUc-AGGCCcgugCGggacUUGCUg -3' miRNA: 3'- -CGCGGCUCCGacUCCGGua--GU----AGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 40397 | 0.66 | 0.480757 |
Target: 5'- uCGCCGAGGC---GGCCggUAU-GCCg -3' miRNA: 3'- cGCGGCUCCGacuCCGGuaGUAgCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 13904 | 0.66 | 0.480757 |
Target: 5'- gGCGUCGGGGUUGuuccaguucaGGGCgAU-GUCGCg -3' miRNA: 3'- -CGCGGCUCCGAC----------UCCGgUAgUAGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 35348 | 0.66 | 0.47068 |
Target: 5'- cGCGCCGuGGGU--AGGCCG-CggCGUCa -3' miRNA: 3'- -CGCGGC-UCCGacUCCGGUaGuaGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 507 | 0.66 | 0.47068 |
Target: 5'- uGCGCCGcggcggcuugcAGGCgguucUGuucGGCCGUCAcCGCg -3' miRNA: 3'- -CGCGGC-----------UCCG-----ACu--CCGGUAGUaGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 11975 | 0.66 | 0.464686 |
Target: 5'- cGCGCCcccuGGCaacugauucagggcGAGGCCcugcccgcgcUCAUCGCCa -3' miRNA: 3'- -CGCGGcu--CCGa-------------CUCCGGu---------AGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 17850 | 0.66 | 0.460712 |
Target: 5'- aCGCCGGacGGCccGAccguGGCCGgccucgcCAUCGCCg -3' miRNA: 3'- cGCGGCU--CCGa-CU----CCGGUa------GUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 6524 | 0.66 | 0.460712 |
Target: 5'- uUGgCGAGuuUuucGGGGUCGUCGUCGCCc -3' miRNA: 3'- cGCgGCUCcgA---CUCCGGUAGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 31030 | 0.66 | 0.460712 |
Target: 5'- -gGCCGAGGCaaucgcgcGGGCCAaCGUgCGCg -3' miRNA: 3'- cgCGGCUCCGac------UCCGGUaGUA-GCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 24695 | 0.66 | 0.460712 |
Target: 5'- aCGCCcAGGCUGu--CCAUCggUGCCa -3' miRNA: 3'- cGCGGcUCCGACuccGGUAGuaGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 6277 | 0.66 | 0.450857 |
Target: 5'- cGCGCUG-GGC--AGGCCGaacagGUCGCCc -3' miRNA: 3'- -CGCGGCuCCGacUCCGGUag---UAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 35625 | 0.66 | 0.441119 |
Target: 5'- cGCGCCGugucccuGGCUGAccaGGCgGUCAUagauucCCa -3' miRNA: 3'- -CGCGGCu------CCGACU---CCGgUAGUAgc----GG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 27965 | 0.66 | 0.441119 |
Target: 5'- gGCGagcaCGuccucgguGGGCUG-GGCCAUCAggcuguaGCCg -3' miRNA: 3'- -CGCg---GC--------UCCGACuCCGGUAGUag-----CGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 1992 | 0.66 | 0.441119 |
Target: 5'- cUGCCGuGGCugaucuUGAGGCCcaggCGcUCGCUg -3' miRNA: 3'- cGCGGCuCCG------ACUCCGGua--GU-AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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