miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 33568 0.66 0.190637
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 33520 0.66 0.190637
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 32389 0.79 0.016894
Target:  5'- gUUGUCGGgACGCCGGCCUugaugGCGGCGAu -3'
miRNA:   3'- -AGCGGCCgUGCGGCCGGG-----UGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 31971 0.69 0.12192
Target:  5'- aCGCCgcaGGCAC-UCGGCCUcgAUGGCGGAa -3'
miRNA:   3'- aGCGG---CCGUGcGGCCGGG--UGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 31773 0.66 0.200659
Target:  5'- gCGCgCGGCGgGCUGGUCa--GGCGGu -3'
miRNA:   3'- aGCG-GCCGUgCGGCCGGgugCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 31107 0.68 0.139311
Target:  5'- uUCGC--GCACGuuGGCCCGC-GCGAu -3'
miRNA:   3'- -AGCGgcCGUGCggCCGGGUGcCGCUu -5'
26635 3' -65.8 NC_005808.1 + 31026 0.66 0.185792
Target:  5'- cUUGCCGGCcgaggcaaucGCGCgGGCCaACGugcGCGAAg -3'
miRNA:   3'- -AGCGGCCG----------UGCGgCCGGgUGC---CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 28730 0.67 0.163168
Target:  5'- gCGCUGGCGaggcCGCCGGCaCCGaucUGGCa-- -3'
miRNA:   3'- aGCGGCCGU----GCGGCCG-GGU---GCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 28639 0.66 0.205841
Target:  5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3'
miRNA:   3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 28553 0.69 0.118693
Target:  5'- cUUG-CGGC-CGCCGGCCauCGCGGCGc- -3'
miRNA:   3'- -AGCgGCCGuGCGGCCGG--GUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 27904 0.68 0.146885
Target:  5'- -aGCagCGGCGCgGCCGGCgCCACcGCGGg -3'
miRNA:   3'- agCG--GCCGUG-CGGCCG-GGUGcCGCUu -5'
26635 3' -65.8 NC_005808.1 + 27808 0.67 0.170567
Target:  5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3'
miRNA:   3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 27757 0.74 0.050554
Target:  5'- cUGCCGGCGCG-CGGCcuguauuccaagaCCACGGUGGAg -3'
miRNA:   3'- aGCGGCCGUGCgGCCG-------------GGUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 27701 0.67 0.163168
Target:  5'- -gGCC-GCGCGCCGGCa-GCGGCu-- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 27518 0.7 0.100945
Target:  5'- gCGCUGGCauaccaGCGCCagGGCCUGCGGCc-- -3'
miRNA:   3'- aGCGGCCG------UGCGG--CCGGGUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 27422 0.67 0.150811
Target:  5'- gCGCCuGGCGCaCCGcGCCCgGCGGCc-- -3'
miRNA:   3'- aGCGG-CCGUGcGGC-CGGG-UGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 27247 0.66 0.205841
Target:  5'- -aGCCGGCGCcCCaGGCUCuuGGcCGAGg -3'
miRNA:   3'- agCGGCCGUGcGG-CCGGGugCC-GCUU- -5'
26635 3' -65.8 NC_005808.1 + 26318 0.67 0.154833
Target:  5'- -gGCCGGCGggUGcCCGuGCCUuCGGCGAc -3'
miRNA:   3'- agCGGCCGU--GC-GGC-CGGGuGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 26268 0.72 0.070723
Target:  5'- cCGCCGGcCugGUCGGCUCGCGcaucgcgcGCGAu -3'
miRNA:   3'- aGCGGCC-GugCGGCCGGGUGC--------CGCUu -5'
26635 3' -65.8 NC_005808.1 + 25978 0.66 0.181056
Target:  5'- uUCcUCGGUuuccuCGCCGGUCUGCGGCGu- -3'
miRNA:   3'- -AGcGGCCGu----GCGGCCGGGUGCCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.