Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 3' | -65.8 | NC_005808.1 | + | 38271 | 0.68 | 0.132097 |
Target: 5'- gCGCCGuCGCGCCgGGCCUugaGCGuGCGGc -3' miRNA: 3'- aGCGGCcGUGCGG-CCGGG---UGC-CGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 24765 | 0.69 | 0.112173 |
Target: 5'- cCGaCUGGCACcgauggacaGCCugggcguggacguGGCCCGCGGCGGg -3' miRNA: 3'- aGC-GGCCGUG---------CGG-------------CCGGGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 38168 | 0.71 | 0.085721 |
Target: 5'- cCGCCGGaUGCGCgCGGCgCCACaGGCGc- -3' miRNA: 3'- aGCGGCC-GUGCG-GCCG-GGUG-CCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 15463 | 0.77 | 0.025835 |
Target: 5'- gUCGuCCGGCAucuuCGCCGGCCCGCacGCGGAc -3' miRNA: 3'- -AGC-GGCCGU----GCGGCCGGGUGc-CGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 26318 | 0.67 | 0.154833 |
Target: 5'- -gGCCGGCGggUGcCCGuGCCUuCGGCGAc -3' miRNA: 3'- agCGGCCGU--GC-GGC-CGGGuGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 34930 | 0.68 | 0.143052 |
Target: 5'- aCGCuCGGCG-GCCGGCUUGCuguuGGCGAc -3' miRNA: 3'- aGCG-GCCGUgCGGCCGGGUG----CCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 4759 | 0.7 | 0.100945 |
Target: 5'- cUUGCCGGCcauucuCGCCGGCUaucCGGCGc- -3' miRNA: 3'- -AGCGGCCGu-----GCGGCCGGgu-GCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 691 | 0.78 | 0.021194 |
Target: 5'- aCGCCGG-ACGCCGuGUCCACGGCGc- -3' miRNA: 3'- aGCGGCCgUGCGGC-CGGGUGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 8908 | 0.68 | 0.143052 |
Target: 5'- -gGCCaaCGCGCUGGCCCGCGuuGCGGc -3' miRNA: 3'- agCGGccGUGCGGCCGGGUGC--CGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 32389 | 0.79 | 0.016894 |
Target: 5'- gUUGUCGGgACGCCGGCCUugaugGCGGCGAu -3' miRNA: 3'- -AGCGGCCgUGCGGCCGGG-----UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 7153 | 0.69 | 0.106564 |
Target: 5'- gCGUgGGCGCGCCGuggguaGgCCGCGGCGu- -3' miRNA: 3'- aGCGgCCGUGCGGC------CgGGUGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 11005 | 0.68 | 0.13566 |
Target: 5'- gUCGCCGcGCAacUGCCcgaGGCCCugcaaacCGGCGGg -3' miRNA: 3'- -AGCGGC-CGU--GCGG---CCGGGu------GCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 14905 | 0.7 | 0.098242 |
Target: 5'- gCGCUGGC-CGCCaacGGCaucgaCCugGGCGAAg -3' miRNA: 3'- aGCGGCCGuGCGG---CCG-----GGugCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 1132 | 0.7 | 0.088097 |
Target: 5'- cCGCgCGcGUuacuggACGCCGGUUCGCGGCGAc -3' miRNA: 3'- aGCG-GC-CG------UGCGGCCGGGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 9240 | 0.72 | 0.065097 |
Target: 5'- gUCGaCGGCGCcaaguugucgcuGCCGGCCCucaaggaaauguACGGCGAGg -3' miRNA: 3'- -AGCgGCCGUG------------CGGCCGGG------------UGCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 27757 | 0.74 | 0.050554 |
Target: 5'- cUGCCGGCGCG-CGGCcuguauuccaagaCCACGGUGGAg -3' miRNA: 3'- aGCGGCCGUGCgGCCG-------------GGUGCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 28730 | 0.67 | 0.163168 |
Target: 5'- gCGCUGGCGaggcCGCCGGCaCCGaucUGGCa-- -3' miRNA: 3'- aGCGGCCGU----GCGGCCG-GGU---GCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 35289 | 0.67 | 0.158951 |
Target: 5'- uUCGuCCaGCG-GCgGGCaCCGCGGCGAc -3' miRNA: 3'- -AGC-GGcCGUgCGgCCG-GGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 8178 | 0.67 | 0.150811 |
Target: 5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3' miRNA: 3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 3949 | 0.68 | 0.143052 |
Target: 5'- uUCGgCGGCGacggcaGCgCGGCCUACaGCGAc -3' miRNA: 3'- -AGCgGCCGUg-----CG-GCCGGGUGcCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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