miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 5' -53.1 NC_005808.1 + 13616 0.66 0.794823
Target:  5'- -cUUGCCGACaGCAUCGGUAGCGg-- -3'
miRNA:   3'- acAGCGGUUGcUGUAGCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 19928 0.66 0.794823
Target:  5'- uUGUCGCCGcCGAacuccuuGUCGGC--CGUGGa -3'
miRNA:   3'- -ACAGCGGUuGCUg------UAGCUGucGCACC- -5'
26646 5' -53.1 NC_005808.1 + 34462 0.66 0.794823
Target:  5'- -uUCGUCAGCGACAU-GGCGGCc--- -3'
miRNA:   3'- acAGCGGUUGCUGUAgCUGUCGcacc -5'
26646 5' -53.1 NC_005808.1 + 8647 0.66 0.794823
Target:  5'- gGUCGCCGgccuucaucGCGcgGUCGGCAuuGCGUGc -3'
miRNA:   3'- aCAGCGGU---------UGCugUAGCUGU--CGCACc -5'
26646 5' -53.1 NC_005808.1 + 36520 0.66 0.784789
Target:  5'- cG-CGCuCGACGACuUCGagGCGGUGUGa -3'
miRNA:   3'- aCaGCG-GUUGCUGuAGC--UGUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 6894 0.66 0.784789
Target:  5'- cGUCGCCGAgGGCAaCGACGaaacccgcGcCGUGu -3'
miRNA:   3'- aCAGCGGUUgCUGUaGCUGU--------C-GCACc -5'
26646 5' -53.1 NC_005808.1 + 36860 0.66 0.784789
Target:  5'- cGgcagCGCCAGCGGauaGUCGGgcaUGGCGUGc -3'
miRNA:   3'- aCa---GCGGUUGCUg--UAGCU---GUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 3475 0.66 0.774589
Target:  5'- aUGuUCGCgGGCGAguUCGACGGCc--- -3'
miRNA:   3'- -AC-AGCGgUUGCUguAGCUGUCGcacc -5'
26646 5' -53.1 NC_005808.1 + 8904 0.66 0.773561
Target:  5'- aUGgCGCUAucgGCGGCGcgcUCGAUggcuucgGGCGUGGa -3'
miRNA:   3'- -ACaGCGGU---UGCUGU---AGCUG-------UCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 2088 0.66 0.764235
Target:  5'- -aUCGCCugcGCGACuUCGcCAGCGagcgccUGGg -3'
miRNA:   3'- acAGCGGu--UGCUGuAGCuGUCGC------ACC- -5'
26646 5' -53.1 NC_005808.1 + 34594 0.66 0.764235
Target:  5'- cUGgCGCCAAgGGCAcgucCGACGcCGUGGu -3'
miRNA:   3'- -ACaGCGGUUgCUGUa---GCUGUcGCACC- -5'
26646 5' -53.1 NC_005808.1 + 34304 0.66 0.764235
Target:  5'- --cCGCUGGCuGCAcugcccCGGCAGCGUGGc -3'
miRNA:   3'- acaGCGGUUGcUGUa-----GCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 22901 0.67 0.75374
Target:  5'- cG-CGCUGuCGGCuGUCGGCAGCGcGGc -3'
miRNA:   3'- aCaGCGGUuGCUG-UAGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 5617 0.67 0.75374
Target:  5'- gGUaGCC-ACGGCGUCGAUguuGGCGaGGu -3'
miRNA:   3'- aCAgCGGuUGCUGUAGCUG---UCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 4876 0.67 0.743115
Target:  5'- cGUUGcCCAGCG-CggCGACGGCGg-- -3'
miRNA:   3'- aCAGC-GGUUGCuGuaGCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 5498 0.67 0.743114
Target:  5'- uUGUCGCaAACagUAUCGGCAaCGUGGa -3'
miRNA:   3'- -ACAGCGgUUGcuGUAGCUGUcGCACC- -5'
26646 5' -53.1 NC_005808.1 + 13748 0.67 0.743114
Target:  5'- --aCGCCGACGACAUCcucACGGUGc-- -3'
miRNA:   3'- acaGCGGUUGCUGUAGc--UGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 18763 0.67 0.742045
Target:  5'- -uUUGCCGGCGAuuucuucCAUCGuCAGCGUcgaGGc -3'
miRNA:   3'- acAGCGGUUGCU-------GUAGCuGUCGCA---CC- -5'
26646 5' -53.1 NC_005808.1 + 18467 0.67 0.732371
Target:  5'- cGgCGCCGGCGGCGUCGGCcGauucguccacCGUGa -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUGuC----------GCACc -5'
26646 5' -53.1 NC_005808.1 + 33596 0.67 0.732371
Target:  5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3'
miRNA:   3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.