miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26647 5' -60.5 NC_005808.1 + 33302 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 32289 0.68 0.28492
Target:  5'- --uGCGGUGGUGGUgAGUucGgacaGGCGCg -3'
miRNA:   3'- cugUGCCACCGCCGgUCG--Caa--CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 31098 0.67 0.306778
Target:  5'- cACcuCGGU-GCaGGCCGGCGagUGGUGCg -3'
miRNA:   3'- cUGu-GCCAcCG-CCGGUCGCa-ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 30675 0.66 0.379896
Target:  5'- cGCugGGUguaGGCGGCgggaauuguCGGUGUugUGGCGg -3'
miRNA:   3'- cUGugCCA---CCGCCG---------GUCGCA--ACCGCg -5'
26647 5' -60.5 NC_005808.1 + 30204 0.8 0.039271
Target:  5'- cGACGCGGU-GCaGGCCGGCGgcguguucUGGCGCg -3'
miRNA:   3'- -CUGUGCCAcCG-CCGGUCGCa-------ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 29394 0.7 0.20428
Target:  5'- cGGCGCGGUa--GGCCAGCagaaucuugGGCGCg -3'
miRNA:   3'- -CUGUGCCAccgCCGGUCGcaa------CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 28758 0.66 0.362677
Target:  5'- aGCGCGGUgcgcuucucGGCGcGCaCGGCGUc-GCGCu -3'
miRNA:   3'- cUGUGCCA---------CCGC-CG-GUCGCAacCGCG- -5'
26647 5' -60.5 NC_005808.1 + 28662 0.68 0.28492
Target:  5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3'
miRNA:   3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5'
26647 5' -60.5 NC_005808.1 + 27836 0.67 0.306778
Target:  5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3'
miRNA:   3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5'
26647 5' -60.5 NC_005808.1 + 27633 0.66 0.374673
Target:  5'- gGGC-CGGUGGuUGGUCGGCaugaaagcuacccagGUgGGCGCc -3'
miRNA:   3'- -CUGuGCCACC-GCCGGUCG---------------CAaCCGCG- -5'
26647 5' -60.5 NC_005808.1 + 27522 0.68 0.257062
Target:  5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3'
miRNA:   3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 27434 0.66 0.354274
Target:  5'- -cCGCGcccGGCGGCCgcaGGCccUGGCGCu -3'
miRNA:   3'- cuGUGCca-CCGCCGG---UCGcaACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 25605 0.69 0.244927
Target:  5'- cGGCuACGGgGGCGcuGCCGGCGgcGGCa- -3'
miRNA:   3'- -CUG-UGCCaCCGC--CGGUCGCaaCCGcg -5'
26647 5' -60.5 NC_005808.1 + 24741 0.68 0.277912
Target:  5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3'
miRNA:   3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 23970 0.68 0.292066
Target:  5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3'
miRNA:   3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 23819 0.75 0.087472
Target:  5'- cGGCcCGGUGGC-GCCGGCa-UGGCGCu -3'
miRNA:   3'- -CUGuGCCACCGcCGGUCGcaACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 23713 0.67 0.299352
Target:  5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3'
miRNA:   3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 23295 0.66 0.379896
Target:  5'- aGGCGCGGUcGGUGGCCgaGGCcgaGGC-Cg -3'
miRNA:   3'- -CUGUGCCA-CCGCCGG--UCGcaaCCGcG- -5'
26647 5' -60.5 NC_005808.1 + 22231 0.71 0.183775
Target:  5'- uGACGCGGcccUGGUugucGGCC-GCGaUGGCGUa -3'
miRNA:   3'- -CUGUGCC---ACCG----CCGGuCGCaACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 21724 0.69 0.226738
Target:  5'- aACGCGGUacGGauGCCAcCGUUgGGCGCg -3'
miRNA:   3'- cUGUGCCA--CCgcCGGUcGCAA-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.