miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26649 5' -54.2 NC_005808.1 + 17804 0.66 0.704941
Target:  5'- cGCGCGCAGuauUCcGCCuGCACgGa--- -3'
miRNA:   3'- uCGCGCGUCu--AGuUGG-CGUGgCaaug -5'
26649 5' -54.2 NC_005808.1 + 13132 0.66 0.704941
Target:  5'- gAGCGCcaauucaacauGCAGA-CGGCCGCACUcaaGCa -3'
miRNA:   3'- -UCGCG-----------CGUCUaGUUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 31054 0.66 0.704941
Target:  5'- cGCGCgugaGCAGAUCGuccACCGUcacGCCGa--- -3'
miRNA:   3'- uCGCG----CGUCUAGU---UGGCG---UGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 38471 0.66 0.704941
Target:  5'- uGGCGgGCAuGUUGGCCGCGagcaCGUcGCg -3'
miRNA:   3'- -UCGCgCGUcUAGUUGGCGUg---GCAaUG- -5'
26649 5' -54.2 NC_005808.1 + 28202 0.66 0.693763
Target:  5'- cGGCGCcuugucCAGGUCGGCCaCGCCGa--- -3'
miRNA:   3'- -UCGCGc-----GUCUAGUUGGcGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 25088 0.66 0.693763
Target:  5'- --aGCGCAGcgCGcCCGgCGCCGUgggaUACa -3'
miRNA:   3'- ucgCGCGUCuaGUuGGC-GUGGCA----AUG- -5'
26649 5' -54.2 NC_005808.1 + 31768 0.66 0.693763
Target:  5'- cGGCGgGCuGGUCAggcgguGCUGCAgCaGUUACu -3'
miRNA:   3'- -UCGCgCGuCUAGU------UGGCGUgG-CAAUG- -5'
26649 5' -54.2 NC_005808.1 + 39655 0.66 0.693763
Target:  5'- aGGCGCgGCGGGUCAuaGCUGC-UCGUc-- -3'
miRNA:   3'- -UCGCG-CGUCUAGU--UGGCGuGGCAaug -5'
26649 5' -54.2 NC_005808.1 + 42360 0.66 0.68252
Target:  5'- aGGCGCGCucuuccguccAGggCGuGCCGUACCGggGg -3'
miRNA:   3'- -UCGCGCG----------UCuaGU-UGGCGUGGCaaUg -5'
26649 5' -54.2 NC_005808.1 + 24225 0.66 0.68252
Target:  5'- aAGCGCGCAGccGUCGaggcGCUGgGCCaGgcGCg -3'
miRNA:   3'- -UCGCGCGUC--UAGU----UGGCgUGG-CaaUG- -5'
26649 5' -54.2 NC_005808.1 + 7749 0.66 0.68252
Target:  5'- -cUGCGCAG-UCAGCgauugcaGCACCGgcGCg -3'
miRNA:   3'- ucGCGCGUCuAGUUGg------CGUGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 7634 0.66 0.68252
Target:  5'- gGGgGCGCGGcUCGACCcaCGCCGg--- -3'
miRNA:   3'- -UCgCGCGUCuAGUUGGc-GUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 34763 0.66 0.681393
Target:  5'- cGUGCGCcuGGUCAucgugcaGCCGCGCCu---- -3'
miRNA:   3'- uCGCGCGu-CUAGU-------UGGCGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 18467 0.66 0.681393
Target:  5'- cGGCGCcgGCGGcGUCGGCCGauucgucCACCGUgaugACc -3'
miRNA:   3'- -UCGCG--CGUC-UAGUUGGC-------GUGGCAa---UG- -5'
26649 5' -54.2 NC_005808.1 + 4531 0.66 0.671227
Target:  5'- uGGCGUGCuGggCggUCGUGCCGccGCg -3'
miRNA:   3'- -UCGCGCGuCuaGuuGGCGUGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 10597 0.66 0.659894
Target:  5'- aGGCGCGCAGc----CUGCACCGc--- -3'
miRNA:   3'- -UCGCGCGUCuaguuGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 22671 0.66 0.656488
Target:  5'- cGCGCGCGGggCGcuucuucgugcaagAUCGCaACCGcgGCg -3'
miRNA:   3'- uCGCGCGUCuaGU--------------UGGCG-UGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 28823 0.66 0.648533
Target:  5'- uGCGCGCcGAgaagCGcACCGCGCUGg--- -3'
miRNA:   3'- uCGCGCGuCUa---GU-UGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 35178 0.66 0.648533
Target:  5'- -uCGaC-CAGAUCGACCGCGCCcagcagGUUGCc -3'
miRNA:   3'- ucGC-GcGUCUAGUUGGCGUGG------CAAUG- -5'
26649 5' -54.2 NC_005808.1 + 31498 0.66 0.648533
Target:  5'- cGC-CGCAGAUCGuggCGuCGCCGUUGa -3'
miRNA:   3'- uCGcGCGUCUAGUug-GC-GUGGCAAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.