miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 1177 0.66 0.338567
Target:  5'- cGgGCCGAUgcgCGAcauGCCGCGCGacacGGCCa -3'
miRNA:   3'- -CgCGGCUG---GCUu--CGGUGCGUc---CCGGa -5'
26658 3' -61.9 NC_005808.1 + 25349 0.66 0.338567
Target:  5'- -gGCCGGCCaGuucgcauagccGGCCACcggGCAGGcGCCa -3'
miRNA:   3'- cgCGGCUGGcU-----------UCGGUG---CGUCC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 29016 0.66 0.338567
Target:  5'- -aGgCGACCaGgcGCCGCGCuucGGCCa -3'
miRNA:   3'- cgCgGCUGG-CuuCGGUGCGuc-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 26982 0.66 0.338567
Target:  5'- -aGCCGACCGAcGCUGCaagaacuGGGGCUa -3'
miRNA:   3'- cgCGGCUGGCUuCGGUGcg-----UCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 27828 0.66 0.338567
Target:  5'- cGCGCUGcCCGcGGUgGCGCc-GGCCg -3'
miRNA:   3'- -CGCGGCuGGCuUCGgUGCGucCCGGa -5'
26658 3' -61.9 NC_005808.1 + 13248 0.66 0.338567
Target:  5'- aCGCCGGCCaagGgcGCCcaGCGCGGccgacacuGGCCg -3'
miRNA:   3'- cGCGGCUGG---CuuCGG--UGCGUC--------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 22836 0.66 0.330655
Target:  5'- cGCGCUGccgacaGCCGAcAGCgCGCGCugcgaauuGGGCUg -3'
miRNA:   3'- -CGCGGC------UGGCU-UCG-GUGCGu-------CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 24562 0.66 0.330655
Target:  5'- cGCGgCGAUggCGAggccGGCCACGgucGGGCCg -3'
miRNA:   3'- -CGCgGCUG--GCU----UCGGUGCgu-CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 27435 0.66 0.330655
Target:  5'- cGCGCCcggcGGCCGcAGGCCcugGCGCuGGuauGCCa -3'
miRNA:   3'- -CGCGG----CUGGC-UUCGG---UGCGuCC---CGGa -5'
26658 3' -61.9 NC_005808.1 + 7557 0.66 0.330655
Target:  5'- cGCgGCCGGgucguacuuaaUCGGAuaguagccGCCGCGUAGGGUCa -3'
miRNA:   3'- -CG-CGGCU-----------GGCUU--------CGGUGCGUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 10891 0.66 0.328308
Target:  5'- cGCGCgGcguauuccuccACCGGAauggcgaccugcccGCCGguuUGCAGGGCCUc -3'
miRNA:   3'- -CGCGgC-----------UGGCUU--------------CGGU---GCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 30418 0.66 0.32288
Target:  5'- uCGCuCGGCauggCGAugAGCgCGgGCAGGGCCUc -3'
miRNA:   3'- cGCG-GCUG----GCU--UCG-GUgCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 14809 0.66 0.318281
Target:  5'- cGCGCCaaugcugcgcguacuGcCUGggGCUaccggGCGCAGGGCa- -3'
miRNA:   3'- -CGCGG---------------CuGGCuuCGG-----UGCGUCCCGga -5'
26658 3' -61.9 NC_005808.1 + 16650 0.66 0.318281
Target:  5'- gGUGCCGGCCGAcgagggagcggacucGGUuuuacccucggCAUcCAGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCU---------------UCG-----------GUGcGUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 18451 0.66 0.315242
Target:  5'- cCGCC-ACCGgcGCCAUcgGCAaGGCCa -3'
miRNA:   3'- cGCGGcUGGCuuCGGUG--CGUcCCGGa -5'
26658 3' -61.9 NC_005808.1 + 37989 0.66 0.315242
Target:  5'- cCGCCGacaucaucGCCGAGGCCGaGCAGuuccucGCCUg -3'
miRNA:   3'- cGCGGC--------UGGCUUCGGUgCGUCc-----CGGA- -5'
26658 3' -61.9 NC_005808.1 + 7254 0.66 0.307742
Target:  5'- cGCGCUGuCCc-GGCUGCGuCAGGGCg- -3'
miRNA:   3'- -CGCGGCuGGcuUCGGUGC-GUCCCGga -5'
26658 3' -61.9 NC_005808.1 + 27519 0.66 0.307742
Target:  5'- cGCGCUGGCaua--CCAgCGcCAGGGCCUg -3'
miRNA:   3'- -CGCGGCUGgcuucGGU-GC-GUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 15459 0.66 0.307742
Target:  5'- cGCGCCcuuGGCCGAAGCUgccguccaguuGCaucgccaccgGCAGGGUUUg -3'
miRNA:   3'- -CGCGG---CUGGCUUCGG-----------UG----------CGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 9371 0.66 0.307
Target:  5'- uGCGCCGccaggucGCCGAGGaagucaaUGCGCAgccgguguaccGGGCCg -3'
miRNA:   3'- -CGCGGC-------UGGCUUCg------GUGCGU-----------CCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.