Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26660 | 3' | -62.8 | NC_005808.1 | + | 32736 | 0.66 | 0.287542 |
Target: 5'- uGCUC---GGGCUUCACGUCGG-GCAg -3' miRNA: 3'- gCGAGcguCCCGGAGUGCGGUCgCGU- -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 16425 | 0.66 | 0.280541 |
Target: 5'- gGC-CGCGGGGUaau-CGCCGGCgGCGu -3' miRNA: 3'- gCGaGCGUCCCGgaguGCGGUCG-CGU- -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 34138 | 0.66 | 0.280541 |
Target: 5'- gGCaUCGCAGGccaCCUCgACGCCGacaucGCGCc -3' miRNA: 3'- gCG-AGCGUCCc--GGAG-UGCGGU-----CGCGu -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 12752 | 0.66 | 0.266945 |
Target: 5'- gGCUaucaagGC-GGGCCUCgacacGCGCC-GCGCAu -3' miRNA: 3'- gCGAg-----CGuCCCGGAG-----UGCGGuCGCGU- -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 17498 | 0.66 | 0.26628 |
Target: 5'- uGCUgGCGGGGCCacugcUCaagggcgACGUgGGCGCc -3' miRNA: 3'- gCGAgCGUCCCGG-----AG-------UGCGgUCGCGu -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 39834 | 0.66 | 0.26035 |
Target: 5'- uGCUCGC--GGCCaCGCGCagCGGCGCc -3' miRNA: 3'- gCGAGCGucCCGGaGUGCG--GUCGCGu -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 15955 | 0.66 | 0.259698 |
Target: 5'- aGCU-GCuGGGCCUCACcuacguGCCcgagcaacagaucGGCGCGu -3' miRNA: 3'- gCGAgCGuCCCGGAGUG------CGG-------------UCGCGU- -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 16057 | 0.66 | 0.253888 |
Target: 5'- aGUUCGCGcacGuGGCCgcCGCGCgCGGCGCc -3' miRNA: 3'- gCGAGCGU---C-CCGGa-GUGCG-GUCGCGu -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 2463 | 0.66 | 0.253888 |
Target: 5'- aCGCUUGCcgcccugacaAGGGUacgCACGCgGGCGUc -3' miRNA: 3'- -GCGAGCG----------UCCCGga-GUGCGgUCGCGu -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 35615 | 0.66 | 0.253888 |
Target: 5'- aGCaggCGCAuGGCCUCggGCGgCAGCGUc -3' miRNA: 3'- gCGa--GCGUcCCGGAG--UGCgGUCGCGu -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 9949 | 0.67 | 0.247558 |
Target: 5'- uCGCcacgCGCcuGGCCgagaagcagCGCGCCGGUGCc -3' miRNA: 3'- -GCGa---GCGucCCGGa--------GUGCGGUCGCGu -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 37851 | 0.67 | 0.247558 |
Target: 5'- aGCUUGUAGaGGUCg-GgGCCGGCGCc -3' miRNA: 3'- gCGAGCGUC-CCGGagUgCGGUCGCGu -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 19303 | 0.67 | 0.247558 |
Target: 5'- aGUUCau-GGGCCUgACGCC-GCGCu -3' miRNA: 3'- gCGAGcguCCCGGAgUGCGGuCGCGu -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 7859 | 0.67 | 0.247558 |
Target: 5'- gCGCcUGCuGGGCggCgaaggguggACGCCGGCGCAg -3' miRNA: 3'- -GCGaGCGuCCCGgaG---------UGCGGUCGCGU- -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 28648 | 0.67 | 0.246932 |
Target: 5'- cCGCgCGCAGuGCCagaUCGgugccggcggccuCGCCAGCGCGg -3' miRNA: 3'- -GCGaGCGUCcCGG---AGU-------------GCGGUCGCGU- -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 27518 | 0.67 | 0.22935 |
Target: 5'- gCGCUgGCauaccagcgccAGGGCCUgCGgcCGCCgGGCGCGg -3' miRNA: 3'- -GCGAgCG-----------UCCCGGA-GU--GCGG-UCGCGU- -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 6730 | 0.67 | 0.223538 |
Target: 5'- cCGCUgCGCuGGGCCgcCGCGCUcaauAGCGgAa -3' miRNA: 3'- -GCGA-GCGuCCCGGa-GUGCGG----UCGCgU- -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 12549 | 0.67 | 0.21785 |
Target: 5'- gGCgUCGguGaauuucuugccGGCCUCGCGCU-GCGCGg -3' miRNA: 3'- gCG-AGCguC-----------CCGGAGUGCGGuCGCGU- -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 31722 | 0.67 | 0.21785 |
Target: 5'- cCGCcgCGCGcGGGCUuuuUCACGCCuaaaaauauGCGCu -3' miRNA: 3'- -GCGa-GCGU-CCCGG---AGUGCGGu--------CGCGu -5' |
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26660 | 3' | -62.8 | NC_005808.1 | + | 18049 | 0.68 | 0.206847 |
Target: 5'- uGCUUG-GGGGCCUUA--CCGGCGCGg -3' miRNA: 3'- gCGAGCgUCCCGGAGUgcGGUCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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