miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26660 3' -62.8 NC_005808.1 + 39834 0.66 0.26035
Target:  5'- uGCUCGC--GGCCaCGCGCagCGGCGCc -3'
miRNA:   3'- gCGAGCGucCCGGaGUGCG--GUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 37851 0.67 0.247558
Target:  5'- aGCUUGUAGaGGUCg-GgGCCGGCGCc -3'
miRNA:   3'- gCGAGCGUC-CCGGagUgCGGUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 37288 0.71 0.127886
Target:  5'- uGCUCGCGGccuacGGCCUCGaccUGCCAGacauGCAg -3'
miRNA:   3'- gCGAGCGUC-----CCGGAGU---GCGGUCg---CGU- -5'
26660 3' -62.8 NC_005808.1 + 35615 0.66 0.253888
Target:  5'- aGCaggCGCAuGGCCUCggGCGgCAGCGUc -3'
miRNA:   3'- gCGa--GCGUcCCGGAG--UGCgGUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 34385 0.71 0.117797
Target:  5'- gGCUUcCAGGGCCaCGCuGCCGGgGCAg -3'
miRNA:   3'- gCGAGcGUCCCGGaGUG-CGGUCgCGU- -5'
26660 3' -62.8 NC_005808.1 + 34240 0.71 0.114602
Target:  5'- aGUUCGCgGGGGCgUCGCGgaacaUCGGCGCGa -3'
miRNA:   3'- gCGAGCG-UCCCGgAGUGC-----GGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 34138 0.66 0.280541
Target:  5'- gGCaUCGCAGGccaCCUCgACGCCGacaucGCGCc -3'
miRNA:   3'- gCG-AGCGUCCc--GGAG-UGCGGU-----CGCGu -5'
26660 3' -62.8 NC_005808.1 + 32736 0.66 0.287542
Target:  5'- uGCUC---GGGCUUCACGUCGG-GCAg -3'
miRNA:   3'- gCGAGcguCCCGGAGUGCGGUCgCGU- -5'
26660 3' -62.8 NC_005808.1 + 31722 0.67 0.21785
Target:  5'- cCGCcgCGCGcGGGCUuuuUCACGCCuaaaaauauGCGCu -3'
miRNA:   3'- -GCGa-GCGU-CCCGG---AGUGCGGu--------CGCGu -5'
26660 3' -62.8 NC_005808.1 + 31660 0.69 0.167533
Target:  5'- cCGCUUGguGGGCCUaCACcgGCCAcaaGCAc -3'
miRNA:   3'- -GCGAGCguCCCGGA-GUG--CGGUcg-CGU- -5'
26660 3' -62.8 NC_005808.1 + 31304 0.74 0.073372
Target:  5'- gGCUCGUAgcuGGGCCgCGCGCCGGgGUu -3'
miRNA:   3'- gCGAGCGU---CCCGGaGUGCGGUCgCGu -5'
26660 3' -62.8 NC_005808.1 + 30437 0.72 0.097074
Target:  5'- gCGCggGCAGGGCCUCGCccugaaucaguuGCCagggGGCGCc -3'
miRNA:   3'- -GCGagCGUCCCGGAGUG------------CGG----UCGCGu -5'
26660 3' -62.8 NC_005808.1 + 30362 0.7 0.145309
Target:  5'- gGCUCGCAGGGgCgcuacccgacguuuUCcggcgacucgcGCGaCCAGCGCAg -3'
miRNA:   3'- gCGAGCGUCCCgG--------------AG-----------UGC-GGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 28648 0.67 0.246932
Target:  5'- cCGCgCGCAGuGCCagaUCGgugccggcggccuCGCCAGCGCGg -3'
miRNA:   3'- -GCGaGCGUCcCGG---AGU-------------GCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 27518 0.67 0.22935
Target:  5'- gCGCUgGCauaccagcgccAGGGCCUgCGgcCGCCgGGCGCGg -3'
miRNA:   3'- -GCGAgCG-----------UCCCGGA-GU--GCGG-UCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 27445 0.69 0.154603
Target:  5'- gGC-CGCAGGcCCUggcgcuggUAUGCCAGCGCGc -3'
miRNA:   3'- gCGaGCGUCCcGGA--------GUGCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 26728 0.68 0.191245
Target:  5'- uGCaaaGCcGGGCCaC-CGCCAGCGCGc -3'
miRNA:   3'- gCGag-CGuCCCGGaGuGCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 25926 0.68 0.196327
Target:  5'- aGCUUGCGGuGGCCcagCAUGuCCcGCGCu -3'
miRNA:   3'- gCGAGCGUC-CCGGa--GUGC-GGuCGCGu -5'
26660 3' -62.8 NC_005808.1 + 21454 0.68 0.196327
Target:  5'- uGCUCGCGcaGGCCcagCGCGCCAuUGCGa -3'
miRNA:   3'- gCGAGCGUc-CCGGa--GUGCGGUcGCGU- -5'
26660 3' -62.8 NC_005808.1 + 20815 0.74 0.071333
Target:  5'- gCGCggCGCAGcGCCUCuacgGCGCCAGCaGCAu -3'
miRNA:   3'- -GCGa-GCGUCcCGGAG----UGCGGUCG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.