miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 5' -56 NC_005808.1 + 653 0.66 0.616778
Target:  5'- gCAGGCGGCCaucaaACUCAAGgAacuggaaaccaauucGCGCGu -3'
miRNA:   3'- -GUCUGCCGGcg---UGAGUUCgU---------------UGCGCu -5'
26665 5' -56 NC_005808.1 + 8833 0.66 0.601124
Target:  5'- uCGGGCcaGCCGCAacgCGGGCcAGCGCGu -3'
miRNA:   3'- -GUCUGc-CGGCGUga-GUUCG-UUGCGCu -5'
26665 5' -56 NC_005808.1 + 38625 0.66 0.601124
Target:  5'- aAGcCGGCCGCGg-CGAGCGGCaggccaGCGGc -3'
miRNA:   3'- gUCuGCCGGCGUgaGUUCGUUG------CGCU- -5'
26665 5' -56 NC_005808.1 + 38311 0.66 0.601124
Target:  5'- gCAGAggaauCGGCCGgACggCAGGCGgauGCGCa- -3'
miRNA:   3'- -GUCU-----GCCGGCgUGa-GUUCGU---UGCGcu -5'
26665 5' -56 NC_005808.1 + 8914 0.66 0.601124
Target:  5'- -cGGCGG-CGCGCUCGauGGCuucgGGCGUGGa -3'
miRNA:   3'- guCUGCCgGCGUGAGU--UCG----UUGCGCU- -5'
26665 5' -56 NC_005808.1 + 19975 0.66 0.59443
Target:  5'- uCGGGCaGGCCGCcgauguccgcguagaACUCGccaacuugcucGGCAugGCGc -3'
miRNA:   3'- -GUCUG-CCGGCG---------------UGAGU-----------UCGUugCGCu -5'
26665 5' -56 NC_005808.1 + 6739 0.66 0.589974
Target:  5'- uGGGCcGCCGCGCUCAA-UAGCG-GAa -3'
miRNA:   3'- gUCUGcCGGCGUGAGUUcGUUGCgCU- -5'
26665 5' -56 NC_005808.1 + 4438 0.66 0.589974
Target:  5'- aAGuCGGCCGuCGCcuUCAcgcgcaccGGCAACGCa- -3'
miRNA:   3'- gUCuGCCGGC-GUG--AGU--------UCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 7307 0.66 0.589974
Target:  5'- uGGGCGGCCGaCAUcgcCGAGgGugaGCGCGGc -3'
miRNA:   3'- gUCUGCCGGC-GUGa--GUUCgU---UGCGCU- -5'
26665 5' -56 NC_005808.1 + 30260 0.66 0.578861
Target:  5'- uCAGAUaGCUGCGCU--GGUcGCGCGAg -3'
miRNA:   3'- -GUCUGcCGGCGUGAguUCGuUGCGCU- -5'
26665 5' -56 NC_005808.1 + 15896 0.66 0.578861
Target:  5'- aCGGACGG-CGUGUUCGAGUccuGCGCGGu -3'
miRNA:   3'- -GUCUGCCgGCGUGAGUUCGu--UGCGCU- -5'
26665 5' -56 NC_005808.1 + 8764 0.66 0.567794
Target:  5'- --cACGuGCCGC-UUCGGGCAgcACGCGGc -3'
miRNA:   3'- gucUGC-CGGCGuGAGUUCGU--UGCGCU- -5'
26665 5' -56 NC_005808.1 + 1357 0.66 0.55678
Target:  5'- -cGGCGGCCuuGCGCaUCcGGCGAC-CGAa -3'
miRNA:   3'- guCUGCCGG--CGUG-AGuUCGUUGcGCU- -5'
26665 5' -56 NC_005808.1 + 35145 0.66 0.55678
Target:  5'- aGGAUGGCguugucuaccgUGCGCUCG-GCGGCGUGc -3'
miRNA:   3'- gUCUGCCG-----------GCGUGAGUuCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 21196 0.66 0.55678
Target:  5'- -cGGCGGCCaaGCU-GGGCAGCGuCGAu -3'
miRNA:   3'- guCUGCCGGcgUGAgUUCGUUGC-GCU- -5'
26665 5' -56 NC_005808.1 + 12472 0.67 0.545829
Target:  5'- aGGACggcaucaaGGCCGCAUaCAAGC-GCGCa- -3'
miRNA:   3'- gUCUG--------CCGGCGUGaGUUCGuUGCGcu -5'
26665 5' -56 NC_005808.1 + 18569 0.67 0.534949
Target:  5'- uGGA-GGCCGCGCUCGcGGUGACGg-- -3'
miRNA:   3'- gUCUgCCGGCGUGAGU-UCGUUGCgcu -5'
26665 5' -56 NC_005808.1 + 41406 0.67 0.513426
Target:  5'- -cGACGG-CGUagaaAUUCAcGGCAGCGCGAu -3'
miRNA:   3'- guCUGCCgGCG----UGAGU-UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 29757 0.67 0.513426
Target:  5'- uCGGccuCGGCUGCuGC-CAGGCGcguGCGCGAg -3'
miRNA:   3'- -GUCu--GCCGGCG-UGaGUUCGU---UGCGCU- -5'
26665 5' -56 NC_005808.1 + 20842 0.67 0.513426
Target:  5'- uGGACGugcaGCCGCGCgaugagUCGAGCGcgGCGCa- -3'
miRNA:   3'- gUCUGC----CGGCGUG------AGUUCGU--UGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.