miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 29462 0.66 0.446827
Target:  5'- -gGCGCAGUUGcagaacgaccCACgccuGGCCGGCa -3'
miRNA:   3'- cgCGCGUCAGCc---------GUGaacuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 25795 0.66 0.446827
Target:  5'- uGCGCGCGGcgcgcUCGGUAUcgUUGAucugcaccgGGCCgccguuGGCg -3'
miRNA:   3'- -CGCGCGUC-----AGCCGUG--AACU---------CCGG------CCG- -5'
26672 5' -59.5 NC_005808.1 + 33932 0.66 0.446827
Target:  5'- uCGCGCGGcaCGcaaugccgaccGCGCgaUGaAGGCCGGCg -3'
miRNA:   3'- cGCGCGUCa-GC-----------CGUGa-AC-UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 16076 0.66 0.437194
Target:  5'- cGCGCGCggcgccguagauGGUCGuGUugUUGAccacGaCCGGCu -3'
miRNA:   3'- -CGCGCG------------UCAGC-CGugAACUc---C-GGCCG- -5'
26672 5' -59.5 NC_005808.1 + 1963 0.66 0.435282
Target:  5'- aGCGCGCGGcccugggggaaGGCACgcUGuAGGCC-GCg -3'
miRNA:   3'- -CGCGCGUCag---------CCGUGa-AC-UCCGGcCG- -5'
26672 5' -59.5 NC_005808.1 + 42501 0.66 0.433375
Target:  5'- gGCGCGCAGaacgaucuggaaaUGGCucGCUUcGAGGCaacccuaGGCg -3'
miRNA:   3'- -CGCGCGUCa------------GCCG--UGAA-CUCCGg------CCG- -5'
26672 5' -59.5 NC_005808.1 + 1982 0.66 0.427682
Target:  5'- cGgGCGCcaccugccgUGGCugauCUUGAGGCCcaGGCg -3'
miRNA:   3'- -CgCGCGuca------GCCGu---GAACUCCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 1082 0.66 0.427682
Target:  5'- cGCGCGCGGUagauugccuUGGC-CgUGucGCgCGGCa -3'
miRNA:   3'- -CGCGCGUCA---------GCCGuGaACucCG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 26789 0.66 0.418293
Target:  5'- uGCGCGguGgUGGC-CgaggguaacGAGGaCCGGCu -3'
miRNA:   3'- -CGCGCguCaGCCGuGaa-------CUCC-GGCCG- -5'
26672 5' -59.5 NC_005808.1 + 16322 0.66 0.418293
Target:  5'- cGCGCGCGaugcgCGaGC-CgaccAGGCCGGCg -3'
miRNA:   3'- -CGCGCGUca---GC-CGuGaac-UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 18526 0.66 0.418293
Target:  5'- cCGCGCGGUCGcCGCUacUGu-GCgCGGCa -3'
miRNA:   3'- cGCGCGUCAGCcGUGA--ACucCG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 41278 0.66 0.418293
Target:  5'- uCGCGCuuGUCGGC-CUgGuGGCCGucGCc -3'
miRNA:   3'- cGCGCGu-CAGCCGuGAaCuCCGGC--CG- -5'
26672 5' -59.5 NC_005808.1 + 26013 0.66 0.40903
Target:  5'- uCGCGUGGUCGGC-CUcGu--CCGGCg -3'
miRNA:   3'- cGCGCGUCAGCCGuGAaCuccGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 8775 0.66 0.40903
Target:  5'- uCGgGCAGcacgCGGCGCacgauGGGUCGGCc -3'
miRNA:   3'- cGCgCGUCa---GCCGUGaac--UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 37491 0.66 0.40903
Target:  5'- gGCGC-CAGccgcacCGGaCGCU--GGGCCGGCc -3'
miRNA:   3'- -CGCGcGUCa-----GCC-GUGAacUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 11177 0.66 0.40903
Target:  5'- cGUGCGCuGGUCGGC-CguggUGAuGGUgCGGUc -3'
miRNA:   3'- -CGCGCG-UCAGCCGuGa---ACU-CCG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 10867 0.66 0.40903
Target:  5'- uGCGUGgcuuCGGUCGGCGCgau-GcGCgCGGCg -3'
miRNA:   3'- -CGCGC----GUCAGCCGUGaacuC-CG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 8999 0.66 0.399896
Target:  5'- cCGCGCGGg-GGCGCUUccagcAGG-CGGCg -3'
miRNA:   3'- cGCGCGUCagCCGUGAAc----UCCgGCCG- -5'
26672 5' -59.5 NC_005808.1 + 28822 0.66 0.399896
Target:  5'- aGCGCGCcgucGUCGGguUgc--GGCCGGa -3'
miRNA:   3'- -CGCGCGu---CAGCCguGaacuCCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 40149 0.66 0.399896
Target:  5'- uUGUGCAacaucgUGGCGCcgaucuucGAGGCCGGCc -3'
miRNA:   3'- cGCGCGUca----GCCGUGaa------CUCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.