miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26692 5' -57.9 NC_005808.1 + 2100 0.65 0.496767
Target:  5'- cAGGUGguCGCCGUGUCGucgguauagauuGCGccGUUGGCg -3'
miRNA:   3'- -UCCGC--GCGGUACGGCu-----------CGUu-CAACCG- -5'
26692 5' -57.9 NC_005808.1 + 790 0.66 0.488433
Target:  5'- cGGGCcgcuGCGCaaucGCCGucAGCAGGUggcugGGCu -3'
miRNA:   3'- -UCCG----CGCGgua-CGGC--UCGUUCAa----CCG- -5'
26692 5' -57.9 NC_005808.1 + 1085 0.66 0.488433
Target:  5'- cGGCGCGCguacuuCAUGuuG-GCGgcGGUaGGCg -3'
miRNA:   3'- uCCGCGCG------GUACggCuCGU--UCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 14822 0.66 0.488433
Target:  5'- cGGCGCuGCCuucgcccagGUCGAuGCc-GUUGGCg -3'
miRNA:   3'- uCCGCG-CGGua-------CGGCU-CGuuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 5121 0.66 0.487396
Target:  5'- cGGCugGCGCCguugaacugcaacGUGCCGcGCAGGc-GGCc -3'
miRNA:   3'- uCCG--CGCGG-------------UACGGCuCGUUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 24642 0.66 0.478109
Target:  5'- uGGCGUGCCG-GCgGGcCAGGaUGGUg -3'
miRNA:   3'- uCCGCGCGGUaCGgCUcGUUCaACCG- -5'
26692 5' -57.9 NC_005808.1 + 28469 0.66 0.478109
Target:  5'- aAGGCaaGCCGcugGCCGA-CGAGUacGGCg -3'
miRNA:   3'- -UCCGcgCGGUa--CGGCUcGUUCAa-CCG- -5'
26692 5' -57.9 NC_005808.1 + 2555 0.66 0.471967
Target:  5'- gGGGcCGCGCUcguaauUGCCGGcuuugaguucagcuuGCAaggccagcaGGUUGGCg -3'
miRNA:   3'- -UCC-GCGCGGu-----ACGGCU---------------CGU---------UCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 18065 0.66 0.467894
Target:  5'- cGGCGCGgggugCGUGCUGGGCcgccgAAGccGGCg -3'
miRNA:   3'- uCCGCGCg----GUACGGCUCG-----UUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 4168 0.66 0.467894
Target:  5'- -uGCGCGCCGUgGUCGAgguguaGCcAGUgGGCg -3'
miRNA:   3'- ucCGCGCGGUA-CGGCU------CGuUCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 35362 0.66 0.464852
Target:  5'- cGGCccGCGCCAgugGCCGAaguuGCAgggcuucaucacgcAGUccgaUGGCa -3'
miRNA:   3'- uCCG--CGCGGUa--CGGCU----CGU--------------UCA----ACCG- -5'
26692 5' -57.9 NC_005808.1 + 28689 0.66 0.46384
Target:  5'- cGGCGCGCCAcgucguucacaagGUCGAuGCu-GUcGGCg -3'
miRNA:   3'- uCCGCGCGGUa------------CGGCU-CGuuCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 33291 0.66 0.457792
Target:  5'- cGuGCGcCGCCAggucGCCGAGgAAGUcaaUGcGCa -3'
miRNA:   3'- uC-CGC-GCGGUa---CGGCUCgUUCA---AC-CG- -5'
26692 5' -57.9 NC_005808.1 + 33590 0.66 0.451788
Target:  5'- uGGUGCGCCGccUGCUGgaagcgcccccgcgcGGCGAGgaaaucgaGGCg -3'
miRNA:   3'- uCCGCGCGGU--ACGGC---------------UCGUUCaa------CCG- -5'
26692 5' -57.9 NC_005808.1 + 4683 0.66 0.451788
Target:  5'- -aGCGCGCCGgaUagcgcggcgagaaugGCCG-GCAAGUuguUGGCu -3'
miRNA:   3'- ucCGCGCGGU--A---------------CGGCuCGUUCA---ACCG- -5'
26692 5' -57.9 NC_005808.1 + 4539 0.66 0.448802
Target:  5'- uGGGCG-GUCGUGCCGccgcggaacuggacuGCGguacucauauGGUUGGCu -3'
miRNA:   3'- -UCCGCgCGGUACGGCu--------------CGU----------UCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 21389 0.66 0.447809
Target:  5'- uGGCGCGCUggGCCuGcGCGAGcaUGGa -3'
miRNA:   3'- uCCGCGCGGuaCGG-CuCGUUCa-ACCg -5'
26692 5' -57.9 NC_005808.1 + 190 0.66 0.447809
Target:  5'- uGGGCacCGUCAcgcUGCCGGGCGAcacGGCg -3'
miRNA:   3'- -UCCGc-GCGGU---ACGGCUCGUUcaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 27790 0.66 0.447809
Target:  5'- aAGGCaGCGCC--GCCGAgguGCAGGUUuccaGCg -3'
miRNA:   3'- -UCCG-CGCGGuaCGGCU---CGUUCAAc---CG- -5'
26692 5' -57.9 NC_005808.1 + 36245 0.67 0.437947
Target:  5'- -aGCGCcccgGCCuucggGCCGGGCGcuUUGGCu -3'
miRNA:   3'- ucCGCG----CGGua---CGGCUCGUucAACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.