miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26727 5' -55.7 NC_005808.1 + 29041 0.66 0.626969
Target:  5'- cAGGUcGAUACCcaccGGCGGcUCGUaGGCCa -3'
miRNA:   3'- aUCUAcUUGUGGc---CCGCC-AGUA-CCGG- -5'
26727 5' -55.7 NC_005808.1 + 29612 0.73 0.232939
Target:  5'- cAGuUGuccAGCGCCGGGCGcUUGUGGCCg -3'
miRNA:   3'- aUCuAC---UUGUGGCCCGCcAGUACCGG- -5'
26727 5' -55.7 NC_005808.1 + 31017 0.66 0.615739
Target:  5'- cAGccGGcgGCcCUGGGCGG-CAUGGCUu -3'
miRNA:   3'- aUCuaCU--UGuGGCCCGCCaGUACCGG- -5'
26727 5' -55.7 NC_005808.1 + 31376 0.66 0.626969
Target:  5'- gGGcGUGGGCGggaaCGuGGCGGUCAUGcGCg -3'
miRNA:   3'- aUC-UACUUGUg---GC-CCGCCAGUAC-CGg -5'
26727 5' -55.7 NC_005808.1 + 34823 0.66 0.615739
Target:  5'- aGGGUGGACGCCGGcGCaGaUCGc-GCCg -3'
miRNA:   3'- aUCUACUUGUGGCC-CGcC-AGUacCGG- -5'
26727 5' -55.7 NC_005808.1 + 37836 0.73 0.252212
Target:  5'- gUGGgcGAACGCCGagaacaucGCGGcCGUGGCCg -3'
miRNA:   3'- -AUCuaCUUGUGGCc-------CGCCaGUACCGG- -5'
26727 5' -55.7 NC_005808.1 + 39934 0.66 0.626969
Target:  5'- -uGAUcGAACACCuGGGCGaccgC-UGGCCc -3'
miRNA:   3'- auCUA-CUUGUGG-CCCGCca--GuACCGG- -5'
26727 5' -55.7 NC_005808.1 + 41606 0.66 0.593332
Target:  5'- -cGGUGAaccacgGCACCGgccaGGCGGcCAagUGGCUg -3'
miRNA:   3'- auCUACU------UGUGGC----CCGCCaGU--ACCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.