Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26727 | 5' | -55.7 | NC_005808.1 | + | 5825 | 0.66 | 0.571062 |
Target: 5'- gGGcAUGGcgugccgcaGCACCGuGCGGUCgaaGUGGCUa -3' miRNA: 3'- aUC-UACU---------UGUGGCcCGCCAG---UACCGG- -5' |
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26727 | 5' | -55.7 | NC_005808.1 | + | 5460 | 0.66 | 0.571061 |
Target: 5'- -cGAUGuuccCGCCGGGCGG-CGaGGUg -3' miRNA: 3'- auCUACuu--GUGGCCCGCCaGUaCCGg -5' |
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26727 | 5' | -55.7 | NC_005808.1 | + | 4523 | 0.74 | 0.20303 |
Target: 5'- --cGUGAACguggcguGCUGGGCGGUCGUGccGCCg -3' miRNA: 3'- aucUACUUG-------UGGCCCGCCAGUAC--CGG- -5' |
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26727 | 5' | -55.7 | NC_005808.1 | + | 4258 | 0.66 | 0.615738 |
Target: 5'- -cGGUGccggccgucAGCGCCGGcaUGGUgAUGGCCg -3' miRNA: 3'- auCUAC---------UUGUGGCCc-GCCAgUACCGG- -5' |
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26727 | 5' | -55.7 | NC_005808.1 | + | 2221 | 0.66 | 0.571061 |
Target: 5'- cGGGU-AGCACCacgcgcagcaGGCGGcgCGUGGCCg -3' miRNA: 3'- aUCUAcUUGUGGc---------CCGCCa-GUACCGG- -5' |
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26727 | 5' | -55.7 | NC_005808.1 | + | 1740 | 1.11 | 0.000448 |
Target: 5'- gUAGAUGAACACCGGGCGGUCAUGGCCg -3' miRNA: 3'- -AUCUACUUGUGGCCCGCCAGUACCGG- -5' |
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26727 | 5' | -55.7 | NC_005808.1 | + | 1440 | 0.69 | 0.414532 |
Target: 5'- aAGAUGGcaaACACCuucuugacGGcGCGGUCGgcGGCCu -3' miRNA: 3'- aUCUACU---UGUGG--------CC-CGCCAGUa-CCGG- -5' |
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26727 | 5' | -55.7 | NC_005808.1 | + | 1366 | 0.66 | 0.604523 |
Target: 5'- gGGAUGGugacauaggGCGCCGcGGCcacgcgcacaacGGuuucacUCAUGGCCg -3' miRNA: 3'- aUCUACU---------UGUGGC-CCG------------CC------AGUACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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