miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26728 3' -62.2 NC_005808.1 + 17426 0.66 0.344126
Target:  5'- aCGUCGCccuugaGCAGU-GGCC--CCGCCAGc -3'
miRNA:   3'- -GCAGCG------CGUCGuCCGGcaGGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 21989 0.66 0.344126
Target:  5'- -uUCGCGCAGCgugcGGGUuuCGUCggCGCCuGGc -3'
miRNA:   3'- gcAGCGCGUCG----UCCG--GCAG--GCGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 30033 0.66 0.341733
Target:  5'- uCGcCGCGCAGCgcgAGGCCGgCaagaaauucaccgaCGCCgAGGu -3'
miRNA:   3'- -GCaGCGCGUCG---UCCGGCaG--------------GCGG-UCC- -5'
26728 3' -62.2 NC_005808.1 + 3874 0.66 0.336195
Target:  5'- cCGUCGCu--GUAGGCCGcgCUGCCGu- -3'
miRNA:   3'- -GCAGCGcguCGUCCGGCa-GGCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 29923 0.66 0.336195
Target:  5'- -uUCGCGCAuCAGuGCCGUggcUUGCCAGu -3'
miRNA:   3'- gcAGCGCGUcGUC-CGGCA---GGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 32357 0.66 0.328398
Target:  5'- gGUCGCuGCGGUcgccgccgAGGCCccggCCGCCcagcAGGa -3'
miRNA:   3'- gCAGCG-CGUCG--------UCCGGca--GGCGG----UCC- -5'
26728 3' -62.2 NC_005808.1 + 27703 0.66 0.328398
Target:  5'- cCG-CGCGcCGGCAgcGGCuCG-CCGCCGGu -3'
miRNA:   3'- -GCaGCGC-GUCGU--CCG-GCaGGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 2132 0.66 0.320735
Target:  5'- -aUCGUGCAGCA-GCCGgucaaccgcgCCGCCGu- -3'
miRNA:   3'- gcAGCGCGUCGUcCGGCa---------GGCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 26135 0.66 0.320735
Target:  5'- uCGUCgcggcagauuugGCGCAGCGGcucGCCGUCUGCg--- -3'
miRNA:   3'- -GCAG------------CGCGUCGUC---CGGCAGGCGgucc -5'
26728 3' -62.2 NC_005808.1 + 42210 0.66 0.313207
Target:  5'- aGUCGCGC-GCuGGCCGcgcucaaUCGgCAGGc -3'
miRNA:   3'- gCAGCGCGuCGuCCGGCa------GGCgGUCC- -5'
26728 3' -62.2 NC_005808.1 + 15584 0.66 0.313207
Target:  5'- aCGaCGCGCuGCGGaugcaccgcGCCaUCgGCCAGGa -3'
miRNA:   3'- -GCaGCGCGuCGUC---------CGGcAGgCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 15141 0.66 0.313207
Target:  5'- gCGgCGCGCuGGCauaccagcgccaGGGCCugcggCCGCCGGGc -3'
miRNA:   3'- -GCaGCGCG-UCG------------UCCGGca---GGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 18412 0.66 0.305813
Target:  5'- aCGUCgGCGaAGguGGCguUGUCCGCCGa- -3'
miRNA:   3'- -GCAG-CGCgUCguCCG--GCAGGCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 5751 0.67 0.298555
Target:  5'- ---aGCGCGcCGGGCagcgaGUgCGCCAGGg -3'
miRNA:   3'- gcagCGCGUcGUCCGg----CAgGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 8221 0.67 0.29143
Target:  5'- aGUCGCGCuGGUcGGCgG-CCGUCAGc -3'
miRNA:   3'- gCAGCGCG-UCGuCCGgCaGGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 4528 0.67 0.284439
Target:  5'- aCGUgGCGUgcugGGC-GGUCGUgCCGCCGcGGa -3'
miRNA:   3'- -GCAgCGCG----UCGuCCGGCA-GGCGGU-CC- -5'
26728 3' -62.2 NC_005808.1 + 6377 0.67 0.283747
Target:  5'- aCGUCG-GCAaucaggcGCAGGCCGgCCgGCCcGGu -3'
miRNA:   3'- -GCAGCgCGU-------CGUCCGGCaGG-CGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 5334 0.67 0.277581
Target:  5'- aCGUgGCGCAGCAuGGCauCGcgCUGCguGGc -3'
miRNA:   3'- -GCAgCGCGUCGU-CCG--GCa-GGCGguCC- -5'
26728 3' -62.2 NC_005808.1 + 19594 0.67 0.277581
Target:  5'- aGgCGCaGCAGCAGGCCGa---CCAGGc -3'
miRNA:   3'- gCaGCG-CGUCGUCCGGCaggcGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 8390 0.67 0.277581
Target:  5'- -cUCGCGCuGGCugcguaGCCaGUCgGCCAGGg -3'
miRNA:   3'- gcAGCGCG-UCGuc----CGG-CAGgCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.